RNA id: TCONS_00012838


Basic Information

Item Value
RNA id TCONS_00012838
length 2021
RNA type mRNA
GC content 0.53
exon number 4
gene id XLOC_006648
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 27000394 ~ 27038407 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atcacaACGCACAGTTTGAGAGGCTGCTGTCACGCTCCATGCGCACAGACGCGACCAGCCGTGCGCCTTCCTAATGCGCCCGTACAGCGGCCACGGGTTCAGCATAACACTGAGCTGGACATGATGCTGACGGACAGATGGAAACAGACACAGTCTCTGCCGTAGAGACAGAGTGTCCATCCGTATTACGAGTCCGTGAGGAGGTGAAGTATTTGCCGGGTCTCTAGGGCTGCATCCCTGTCTTCAAAGTGGACAGCATGGGCAGAACAGCTATCGTTAAAATGATAGTATCAAAAATTCGATCCTAACGAGAAGGAATTTGCAGAAAAGGTGCCAACGGCGGATTTAATCGGCTTGTCGGTGATTTATTTCATAGCCTAGCAGTTCAAGAAGTTGGAAGGGAGGATGGAGAAGCCTAGTCAGCCTCAGCCGCATTCTGGTGGATCCAAAAGCACAGAAGGTCCCTCTGAGGACCTTTCCAAACTTACGGACGAGGAGCTTCTGAAATGGAGCAAGGAGGAGCTGGTTCGCCGGTTGCGCAGAGCCGAAGCCGAGAAGATGAGCGTAATAGTGGACCACAGCAATCTCATCCGAGAGGTAAATCGCAGGCTTCAGCAGCACCTCAACGAGATACGAGGACTTAAGGAGGTGAATCAGAAGCTGCAAGAGGACAACCAGGAGCTGCGGGACCTCTGCTGCTTTCTAGATGATGACCGGCAAAAAGGGAAGAAAGTGTCAAGGGAGTGGCAGCGCCTGGGCCGCTACAGCGCAGGGATTATGCGTAAGGAGGTGACACTATACCTGCAGAAACTGAAAGAGCTGGAGCAGAGGCAGGAGGAAGTAGTGAGGGAGAACCTAGAACTGAGAGAGCTGTGCCTAATGCTGGATGAGGAGAAGGGATCTGGAGGTACCAGCGGGTCAGTAGGCACCGGTGGACCGGCAGGCTGCAGGAATTCAATCGATAGTCAGAGCAGCTTGTCTCATGCCAGCGGTCCTGGGCCTGGTTTACTAAGGGATGTAGGTGATGGGAGCAGTACCTCCAGCGCGGGCAGCACTGACAGCCCTGACCATCTCACACATAAGCAGCAGCTGTTGGGTGGCCCGGTTGGAGGCAGTCCTGACCACCTACATAAGCCAGGCTCAGGGGAGGAGGCACCGGGTCCAGAGAATCCTAGCCGCAGGCATAGCACCAGCCAGGAGTATGCAGCACATACCTTTCCCCAAGTGTGCCGGTCCCGCTGTGGATCCTTCTCCAGTCCAGATCACAAGGGACTACGAGGTCTTAGTCCAGAGAAACTTGCCAAAAGGGGCAGTCCAGAGCAATTCTCTAAACACCTGTTGGTTTCTTCTCAACCGCCCGGCAGCCCGGACCTTTTTCAGAAGCACAGGGGTAGCATGGGGAGTGTGTGTGGGAGTCCAGAGCCCAAACAGATATTATcagggacaccggagcacctACAGAAGGGCCGTGTCATATCTGGGAGCCCTGAGTTGTTGAGGCATCAACACGTCAAGTTTGGCAGTCCCGGCCGAGAGGTGGTACAGAAGCGGCCGGGCGTAGAGGAGATGTCCCCTCATCACCGGAGCATCTATAGCGCTCTGATATCTGCTGGCTGTTGCACCAGCGCCTGTAGAAGTGTCAAGCTTTGGGACAGTTTTGATACCTCCTGACCAATGCCTTGACCGGATCCAGCGGTGGGACTGTGGCCCTGAAAGAGGATCCCTGTTGCTTTAATATGACTTGCACTGACAGAAATGAAGGGCGAAGATGGAAAAGTGTGATTGAAAGACAAGAACTTCTAGCAGCAGCCAGTGTCTCTCGTCGCCCTCCATCAACATGCTGGTTCCTGCTGGTCTCCTAAAACAACTTACAGCCCTGCACAAACCCAGGCCTGGGGGAGGAATTCCTTCTGATTTCAAAAGCTGGAACATGATTGCCAAAAGGATTTCTCACATGGGAGATTAAAACATCTCTCTTTTGCCAACAAAATAGACCTACCTCCTTTGAATGAAagcagacg

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080220-55 Predicted to be located in adherens junction. Orthologous to human CCDC85A (coiled-coil domain containing 85A).

Ensembl:

ensembl_id ENSDART00000146712

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012836 lncRNA downstream 201221 26797396 ~ 26799173 (-) True XLOC_006647
TCONS_00012835 lncRNA downstream 214310 26780568 ~ 26786084 (-) False XLOC_006647
TCONS_00013803 lncRNA downstream 296590 26552801 ~ 26703804 (-) False XLOC_006644
TCONS_00013805 lncRNA upstream 188954 27227361 ~ 27227750 (-) True XLOC_006649
TCONS_00013806 lncRNA upstream 232931 27271338 ~ 27277709 (-) True XLOC_006650
TCONS_00013807 lncRNA upstream 763008 27801415 ~ 27816607 (-) False XLOC_006655
TCONS_00013808 lncRNA upstream 763008 27801415 ~ 27816617 (-) False XLOC_006655
TCONS_00013809 lncRNA upstream 763008 27801415 ~ 27816641 (-) True XLOC_006655
TCONS_00012834 mRNA downstream 201150 26780004 ~ 26799244 (-) False XLOC_006647
TCONS_00012825 mRNA downstream 1158320 25824345 ~ 25842074 (-) False XLOC_006642
TCONS_00012824 mRNA downstream 1180569 25795511 ~ 25819825 (-) True XLOC_006641
TCONS_00012821 mRNA downstream 1226211 25762908 ~ 25774183 (-) False XLOC_006639
TCONS_00012822 mRNA downstream 1233184 25765474 ~ 25767210 (-) False XLOC_006639
TCONS_00012839 mRNA upstream 294249 27332656 ~ 27354033 (-) False XLOC_006651
TCONS_00012840 mRNA upstream 294259 27332666 ~ 27354003 (-) True XLOC_006651
TCONS_00012841 mRNA upstream 340450 27378857 ~ 27388097 (-) False XLOC_006652
TCONS_00012842 mRNA upstream 340450 27378857 ~ 27620815 (-) False XLOC_006652
TCONS_00012843 mRNA upstream 340450 27378857 ~ 27621246 (-) False XLOC_006652
TCONS_00012832 other downstream 433210 26567066 ~ 26567184 (-) True XLOC_006646
TCONS_00012810 other downstream 1451780 25545676 ~ 25548614 (-) False XLOC_006634
TCONS_00012805 other downstream 1469746 25530534 ~ 25530648 (-) True XLOC_006633
TCONS_00012791 other downstream 1801169 25058733 ~ 25199225 (-) False XLOC_006628
TCONS_00012849 other upstream 612772 27651179 ~ 27663072 (-) False XLOC_006653
TCONS_00012853 other upstream 651753 27690160 ~ 27690276 (-) True XLOC_006654
TCONS_00012858 other upstream 1141027 28179434 ~ 28179550 (-) True XLOC_006658
TCONS_00012861 other upstream 1238491 28276898 ~ 28295414 (-) False XLOC_006661
TCONS_00012862 other upstream 1247455 28285862 ~ 28417158 (-) True XLOC_006661

Expression Profile

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