RNA id: TCONS_00013805


Basic Information

Item Value
RNA id TCONS_00013805
length 258
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id XLOC_006649
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 27227361 ~ 27227750 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCCTCTGGACTGTCGATACAGTTTTGGGAACAAGACCATTCTCCTCTGAGCTTCAGTATCTTCTAAATGCTGTTCAGTTACATCAAGCTGCTCCATTGTTCGTAGCGGCAGATCGATGTCGAGCGGCTCATCTTCCTCTTCACACACTTGTCCGTGAATCCTAGCCTGTAGATCTTTCAGAACTTCCCACTGCCTCTGCTGCTCCTCCTTGATCTCAATAAGCAGTGATATGATTTTTCTCTGTGCTGCTGACTCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012837 lncRNA downstream 188954 27000394 ~ 27038407 (-) True XLOC_006648
TCONS_00012836 lncRNA downstream 428188 26797396 ~ 26799173 (-) True XLOC_006647
TCONS_00012835 lncRNA downstream 441277 26780568 ~ 26786084 (-) False XLOC_006647
TCONS_00013804 lncRNA downstream 523557 26648406 ~ 26703804 (-) False XLOC_006644
TCONS_00013806 lncRNA upstream 43588 27271338 ~ 27277709 (-) True XLOC_006650
TCONS_00013807 lncRNA upstream 573665 27801415 ~ 27816607 (-) False XLOC_006655
TCONS_00013808 lncRNA upstream 573665 27801415 ~ 27816617 (-) False XLOC_006655
TCONS_00013809 lncRNA upstream 573665 27801415 ~ 27816641 (-) True XLOC_006655
TCONS_00013810 lncRNA upstream 1199727 28427477 ~ 28444818 (-) True XLOC_006663
TCONS_00012838 mRNA downstream 188954 27000394 ~ 27038407 (-) False XLOC_006648
TCONS_00012834 mRNA downstream 428117 26780004 ~ 26799244 (-) False XLOC_006647
TCONS_00012825 mRNA downstream 1385287 25824345 ~ 25842074 (-) False XLOC_006642
TCONS_00012824 mRNA downstream 1407536 25795511 ~ 25819825 (-) True XLOC_006641
TCONS_00012821 mRNA downstream 1453178 25762908 ~ 25774183 (-) False XLOC_006639
TCONS_00012839 mRNA upstream 104906 27332656 ~ 27354033 (-) False XLOC_006651
TCONS_00012840 mRNA upstream 104916 27332666 ~ 27354003 (-) True XLOC_006651
TCONS_00012841 mRNA upstream 151107 27378857 ~ 27388097 (-) False XLOC_006652
TCONS_00012842 mRNA upstream 151107 27378857 ~ 27620815 (-) False XLOC_006652
TCONS_00012843 mRNA upstream 151107 27378857 ~ 27621246 (-) False XLOC_006652
TCONS_00012832 other downstream 660177 26567066 ~ 26567184 (-) True XLOC_006646
TCONS_00012810 other downstream 1678747 25545676 ~ 25548614 (-) False XLOC_006634
TCONS_00012805 other downstream 1696713 25530534 ~ 25530648 (-) True XLOC_006633
TCONS_00012791 other downstream 2028136 25058733 ~ 25199225 (-) False XLOC_006628
TCONS_00012849 other upstream 423429 27651179 ~ 27663072 (-) False XLOC_006653
TCONS_00012853 other upstream 462410 27690160 ~ 27690276 (-) True XLOC_006654
TCONS_00012858 other upstream 951684 28179434 ~ 28179550 (-) True XLOC_006658
TCONS_00012861 other upstream 1049148 28276898 ~ 28295414 (-) False XLOC_006661
TCONS_00012862 other upstream 1058112 28285862 ~ 28417158 (-) True XLOC_006661