RNA id: TCONS_00013806


Basic Information

Item Value
RNA id TCONS_00013806
length 1276
lncRNA type antisense_over
GC content 0.50
exon number 4
gene id XLOC_006650
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 27271338 ~ 27277709 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGAGCAGTGCTCATGCGCGGGGCTGCCATTCTCCATGGCAGTGGGGTTACGAGAGGATAGCTTGGCCAGACTCCAAGACACTGCATCCTCAATGGTTTGATCATCCAAAGCCATGTGGCATCGGATACCGTCCGCATCAAGCAGACCGGAGGAGTTCTTATTGCGGGCCGAGGGCACCAGGATGGGTTTGCTGAACTTTTTCGGTGGGGAGGATGAGGGAGATAAGGAAATGAAGGATGATCCCAATCTCCCCAGCAGGCTGGTCTTTTCCTGAGGTGTTTTGATCCAACAAACTGTTTCAGGCATGGTCTTCTGTTTGCGAagaactgctgatctgctggaaCCAAAACGTGGAGGTGGAGGCCTAGGCGGCGGTGATCTCTCGCTCTCAGATCTGCTCACACTTATGTGGGGTTTGCTTGGTGTTTTACGGCAGAATACGCTGCTGTCCCCTTGCTGCTGACCTGTTCTGTGCAGAGCTCTGTGGTGGTGCTGAGAGCCACCACCTTCGTCACCTGGGGATGGTTCTTGCTTTTTGGGTGAAGGGTTAGATTGGTGTGTCTGCAGGAAGAGGGGATTGATGAAGCAAAGTGCACCGTTGGATTGGCTGCATTCAAGTTCAGAAGGGGTCCGGGTAAACGGGACGGCTGGACTTCTTTTTAGTCTCTGTTTTGAACCATCACAAGCAGTTTCCCCAGACACAGAAGACTTGTTCTTATTGCACAGTTCCGAGTCCCAAAAACCTACACAAGATAAACACAATCATCTCAACGATGACATCTGAGACAAGAGCGGGAAGCCTTAACGTCACTCGGCTCAGGTCTGCTAAAGTGATATCTGTGCAGGAGTGGAATAACTGGAAATCTGCAGCTGTGTAAACAACTTTCACCCCCACTATCCCAGTCATTATAGACAGTCAATGAGCAGCTGGAATTTGGACTTGGTGGAGTTCCTTTTGGAAAGGATCCTAGTATGAAGCTGGAGTCCCCAAGAGCTACACTTGAGGGGACCTCATCACTACACTGCGtatgaagctgcggtcacacaggacttttctccccatagacctccattcataggaacgcgaatgcgtcagaccgggatcacaagctcatgcgacaagtttcacagttcaatcaatcgcatcacttgactgcttgagaccaaacaagatcaaaacatgacctctctgcacagaaattttaaatatggaccaatcgcttgcttttttaaatgtctaatcatcttgtttaatcccgccccttttcccaGTGC

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048741 skeletal muscle fiber development biological_process
GO:0021546 rhombomere development biological_process
GO:0048513 animal organ development biological_process
GO:0021593 rhombomere morphogenesis biological_process
GO:0021594 rhombomere formation biological_process
GO:0007275 multicellular organism development biological_process
GO:0014904 myotube cell development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0009790 embryo development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013805 lncRNA downstream 43588 27227361 ~ 27227750 (-) True XLOC_006649
TCONS_00012837 lncRNA downstream 232931 27000394 ~ 27038407 (-) True XLOC_006648
TCONS_00012836 lncRNA downstream 472165 26797396 ~ 26799173 (-) True XLOC_006647
TCONS_00012835 lncRNA downstream 485254 26780568 ~ 26786084 (-) False XLOC_006647
TCONS_00012833 lncRNA downstream 567534 26689479 ~ 26703804 (-) True XLOC_006644
TCONS_00013807 lncRNA upstream 523706 27801415 ~ 27816607 (-) False XLOC_006655
TCONS_00013808 lncRNA upstream 523706 27801415 ~ 27816617 (-) False XLOC_006655
TCONS_00013809 lncRNA upstream 523706 27801415 ~ 27816641 (-) True XLOC_006655
TCONS_00013810 lncRNA upstream 1149768 28427477 ~ 28444818 (-) True XLOC_006663
TCONS_00013811 lncRNA upstream 1220093 28497802 ~ 28513141 (-) False XLOC_006664
TCONS_00012838 mRNA downstream 232931 27000394 ~ 27038407 (-) False XLOC_006648
TCONS_00012834 mRNA downstream 472094 26780004 ~ 26799244 (-) False XLOC_006647
TCONS_00012825 mRNA downstream 1429264 25824345 ~ 25842074 (-) False XLOC_006642
TCONS_00012824 mRNA downstream 1451513 25795511 ~ 25819825 (-) True XLOC_006641
TCONS_00012822 mRNA downstream 1504128 25765474 ~ 25767210 (-) False XLOC_006639
TCONS_00012839 mRNA upstream 54947 27332656 ~ 27354033 (-) False XLOC_006651
TCONS_00012840 mRNA upstream 54957 27332666 ~ 27354003 (-) True XLOC_006651
TCONS_00012841 mRNA upstream 101148 27378857 ~ 27388097 (-) False XLOC_006652
TCONS_00012842 mRNA upstream 101148 27378857 ~ 27620815 (-) False XLOC_006652
TCONS_00012843 mRNA upstream 101148 27378857 ~ 27621246 (-) False XLOC_006652
TCONS_00012832 other downstream 704154 26567066 ~ 26567184 (-) True XLOC_006646
TCONS_00012810 other downstream 1722724 25545676 ~ 25548614 (-) False XLOC_006634
TCONS_00012805 other downstream 1740690 25530534 ~ 25530648 (-) True XLOC_006633
TCONS_00012791 other downstream 2072113 25058733 ~ 25199225 (-) False XLOC_006628
TCONS_00012849 other upstream 373470 27651179 ~ 27663072 (-) False XLOC_006653
TCONS_00012853 other upstream 412451 27690160 ~ 27690276 (-) True XLOC_006654
TCONS_00012858 other upstream 901725 28179434 ~ 28179550 (-) True XLOC_006658
TCONS_00012861 other upstream 999189 28276898 ~ 28295414 (-) False XLOC_006661
TCONS_00012862 other upstream 1008153 28285862 ~ 28417158 (-) True XLOC_006661

Expression Profile

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