Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00012839 |
| length | 1576 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 11 |
| gene id | XLOC_006651 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007124.7 |
| NCBI id | CM002897.2 |
| chromosome length | 52186027 |
| location | 27332656 ~ 27354033 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0005524 | ATP binding | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| GO:0003724 | RNA helicase activity | molecular_function |
| GO:0004386 | helicase activity | molecular_function |
| id | description |
|---|---|
| ko03041 | Spliceosome |
| id | description |
|---|---|
| ZDB-GENE-080204-77 | Predicted to enable RNA binding activity and RNA helicase activity. Orthologous to several human genes including DDX43 (DEAD-box helicase 43). |
| ensembl_id | ENSDART00000044652 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00013806 | lncRNA | downstream | 54947 | 27271338 ~ 27277709 (-) | True | XLOC_006650 |
| TCONS_00013805 | lncRNA | downstream | 104906 | 27227361 ~ 27227750 (-) | True | XLOC_006649 |
| TCONS_00012837 | lncRNA | downstream | 294249 | 27000394 ~ 27038407 (-) | True | XLOC_006648 |
| TCONS_00012836 | lncRNA | downstream | 533483 | 26797396 ~ 26799173 (-) | True | XLOC_006647 |
| TCONS_00012835 | lncRNA | downstream | 546572 | 26780568 ~ 26786084 (-) | False | XLOC_006647 |
| TCONS_00013807 | lncRNA | upstream | 447382 | 27801415 ~ 27816607 (-) | False | XLOC_006655 |
| TCONS_00013808 | lncRNA | upstream | 447382 | 27801415 ~ 27816617 (-) | False | XLOC_006655 |
| TCONS_00013809 | lncRNA | upstream | 447382 | 27801415 ~ 27816641 (-) | True | XLOC_006655 |
| TCONS_00013810 | lncRNA | upstream | 1073444 | 28427477 ~ 28444818 (-) | True | XLOC_006663 |
| TCONS_00013811 | lncRNA | upstream | 1143769 | 28497802 ~ 28513141 (-) | False | XLOC_006664 |
| TCONS_00012838 | mRNA | downstream | 294249 | 27000394 ~ 27038407 (-) | False | XLOC_006648 |
| TCONS_00012834 | mRNA | downstream | 533412 | 26780004 ~ 26799244 (-) | False | XLOC_006647 |
| TCONS_00012825 | mRNA | downstream | 1490582 | 25824345 ~ 25842074 (-) | False | XLOC_006642 |
| TCONS_00012824 | mRNA | downstream | 1512831 | 25795511 ~ 25819825 (-) | True | XLOC_006641 |
| TCONS_00012821 | mRNA | downstream | 1558473 | 25762908 ~ 25774183 (-) | False | XLOC_006639 |
| TCONS_00012841 | mRNA | upstream | 24824 | 27378857 ~ 27388097 (-) | False | XLOC_006652 |
| TCONS_00012842 | mRNA | upstream | 24824 | 27378857 ~ 27620815 (-) | False | XLOC_006652 |
| TCONS_00012843 | mRNA | upstream | 24824 | 27378857 ~ 27621246 (-) | False | XLOC_006652 |
| TCONS_00012844 | mRNA | upstream | 25585 | 27379618 ~ 27384697 (-) | True | XLOC_006652 |
| TCONS_00012845 | mRNA | upstream | 277893 | 27631926 ~ 27660955 (-) | False | XLOC_006653 |
| TCONS_00012832 | other | downstream | 765472 | 26567066 ~ 26567184 (-) | True | XLOC_006646 |
| TCONS_00012810 | other | downstream | 1784042 | 25545676 ~ 25548614 (-) | False | XLOC_006634 |
| TCONS_00012805 | other | downstream | 1802008 | 25530534 ~ 25530648 (-) | True | XLOC_006633 |
| TCONS_00012791 | other | downstream | 2133431 | 25058733 ~ 25199225 (-) | False | XLOC_006628 |
| TCONS_00012849 | other | upstream | 297146 | 27651179 ~ 27663072 (-) | False | XLOC_006653 |
| TCONS_00012853 | other | upstream | 336127 | 27690160 ~ 27690276 (-) | True | XLOC_006654 |
| TCONS_00012858 | other | upstream | 825401 | 28179434 ~ 28179550 (-) | True | XLOC_006658 |
| TCONS_00012861 | other | upstream | 922865 | 28276898 ~ 28295414 (-) | False | XLOC_006661 |
| TCONS_00012862 | other | upstream | 931829 | 28285862 ~ 28417158 (-) | True | XLOC_006661 |
