RNA id: TU6686


Basic Information

Item Value
RNA id TU6686
length 204
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G6016
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 9069824 ~ 9070027 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAATGTTTACTTGTTCCTCCCACATCAAAATGCATTAAAGGGCAAAATTCAAATGTGTGTTGGCAGTGTGTGTACACAACCACCCTATAATGATAAAAATCCACCCACTCCTTTTTTTAATTCCCATAAATCATAAGCAGTGTCTCAGAACAAGCCTTTTGCAGATTCTGGGCAAAGCGACGTCGCTTTGCACAAGCTCCGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6685 lncRNA downstream 777 9068818 ~ 9069047 (-) True G6015
TU6589 lncRNA downstream 31239 8919595 ~ 9038585 (-) False G5943
TU6620 lncRNA downstream 34211 9024026 ~ 9035613 (-) True G5951
TU6610 lncRNA downstream 53345 8996315 ~ 9016479 (-) False G5947
TU6611 lncRNA downstream 53345 8996315 ~ 9016479 (-) True G5947
TU6707 lncRNA upstream 24136 9094163 ~ 9094388 (-) True G6037
TU6719 lncRNA upstream 35164 9105191 ~ 9105425 (-) True G6049
TU6773 lncRNA upstream 99972 9169999 ~ 9192117 (-) True G6096
TU6879 lncRNA upstream 263573 9333600 ~ 9334385 (-) True G6202
TU6906 lncRNA upstream 297321 9367348 ~ 9367573 (-) True G6229
CI01000000_09059743_09060201.mRNA mRNA downstream 9623 9059642 ~ 9060201 (-) True CI01000000_09059743_09060201
CI01000000_09046286_09058330.mRNA mRNA downstream 11494 9045128 ~ 9058330 (-) True CI01000000_09046286_09058330
CI01000000_08992501_08994328.mRNA mRNA downstream 75063 8992262 ~ 8994761 (-) False CI01000000_08992501_08994328
CI01000000_08975466_08977875.mRNA mRNA downstream 91949 8975404 ~ 8977875 (-) True CI01000000_08975466_08977875
CI01000000_08973303_08974193.mRNA mRNA downstream 95631 8972450 ~ 8974193 (-) True CI01000000_08973303_08974193
CI01000000_09421380_09425048.mRNA mRNA upstream 351250 9421277 ~ 9425048 (-) True CI01000000_09421380_09425048
CI01000000_09451613_09452011.mRNA mRNA upstream 380585 9450612 ~ 9452186 (-) False CI01000000_09451613_09452011
CI01000000_09469075_09494668.mRNA mRNA upstream 398993 9469020 ~ 9495980 (-) True CI01000000_09469075_09494668
CI01000000_09506970_09508416.mRNA mRNA upstream 436265 9506292 ~ 9509326 (-) True CI01000000_09506970_09508416
CI01000000_09530735_09630567.mRNA mRNA upstream 460708 9530735 ~ 9630567 (-) True CI01000000_09530735_09630567
TU4363 other downstream 2666299 6157013 ~ 6403525 (-) False G3931
TU4125 other downstream 3069055 6000407 ~ 6000769 (-) True G3716
TU4058 other downstream 3528943 5540463 ~ 5540881 (-) True G3650
TU3917 other downstream 3603308 5465454 ~ 5465799 (-) True G3519
TU3038 other downstream 4679672 4386383 ~ 4390152 (-) True G2730
TU8769 other upstream 1334301 10404328 ~ 10414513 (-) True G7948
TU8770 other upstream 1754384 10827450 ~ 10827595 (-) True G7949
TU8948 other upstream 1970242 11040269 ~ 11040909 (-) True G8125
TU9592 other upstream 4215297 13285324 ~ 13311429 (-) False G8699
TU9587 other upstream 4234249 13304276 ~ 13311429 (-) True G8699

Expression Profile