RNA id: TU7209


Basic Information

Item Value
RNA id TU7209
length 212
lncRNA type intronic
GC content 0.46
exon number 1
gene id G6521
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 9651524 ~ 9651735 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTCGAATCAACAATGGAGTTTAAAAAATACGACAGATGGATTGACGATGAGGTTCAGGCTTGTGAAGGACGAAATCCAGCGGGAACTGGAAAGTCGCGCACAGTCCCACGTCACTGGACTATCTTCACAGTACTTTAGACCGCTATGGAAACGCAGCTAGCAATAGGTCTGGGGGGGAAATTCCTGGGACAAATTGTTACAGGTAATTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7148 lncRNA downstream 64932 9570858 ~ 9586592 (-) True G6460
TU7151 lncRNA downstream 122174 9519922 ~ 9529350 (-) True G6463
TU7204 lncRNA downstream 197230 9454084 ~ 9454294 (-) True G6516
TU7203 lncRNA downstream 198176 9453062 ~ 9453348 (-) True G6515
TU7201 lncRNA downstream 200354 9450908 ~ 9451170 (-) True CI01000000_09451613_09452011
TU7215 lncRNA upstream 8490 9660225 ~ 9660450 (-) True G6527
TU7216 lncRNA upstream 9021 9660756 ~ 9660960 (-) True G6528
TU7220 lncRNA upstream 21205 9672940 ~ 9673552 (-) True G6532
TU7223 lncRNA upstream 27171 9678906 ~ 9679119 (-) True G6535
TU7321 lncRNA upstream 57687 9709422 ~ 9787443 (-) True G6627
CI01000000_09530735_09630567.mRNA mRNA downstream 20957 9530735 ~ 9630567 (-) True CI01000000_09530735_09630567
CI01000000_09506970_09508416.mRNA mRNA downstream 142198 9506292 ~ 9509326 (-) True CI01000000_09506970_09508416
CI01000000_09469075_09494668.mRNA mRNA downstream 155544 9469020 ~ 9495980 (-) True CI01000000_09469075_09494668
CI01000000_09451613_09452011.mRNA mRNA downstream 199338 9450612 ~ 9452186 (-) False CI01000000_09451613_09452011
CI01000000_09421380_09425048.mRNA mRNA downstream 226476 9421277 ~ 9425048 (-) True CI01000000_09421380_09425048
CI01000000_09913788_09975299.mRNA mRNA upstream 261924 9913659 ~ 9976167 (-) True CI01000000_09913788_09975299
CI01000000_10096840_10101549.mRNA mRNA upstream 444989 10096724 ~ 10101758 (-) True CI01000000_10096840_10101549
CI01000000_10106854_10121986.mRNA mRNA upstream 454922 10106657 ~ 10123017 (-) True CI01000000_10106854_10121986
CI01000000_10151976_10164598.mRNA mRNA upstream 500200 10151935 ~ 10164862 (-) True CI01000000_10151976_10164598
CI01000000_10168220_10187727.mRNA mRNA upstream 516388 10168123 ~ 10187937 (-) True CI01000000_10168220_10187727
TU4363 other downstream 3247999 6157013 ~ 6403525 (-) False G3931
TU4125 other downstream 3650755 6000407 ~ 6000769 (-) True G3716
TU4058 other downstream 4110643 5540463 ~ 5540881 (-) True G3650
TU3917 other downstream 4185008 5465454 ~ 5465799 (-) True G3519
TU3038 other downstream 5261372 4386383 ~ 4390152 (-) True G2730
TU8769 other upstream 752593 10404328 ~ 10414513 (-) True G7948
TU8770 other upstream 1172676 10827450 ~ 10827595 (-) True G7949
TU8948 other upstream 1388534 11040269 ~ 11040909 (-) True G8125
TU9592 other upstream 3633589 13285324 ~ 13311429 (-) False G8699
TU9587 other upstream 3652541 13304276 ~ 13311429 (-) True G8699

Expression Profile