RNA id: TU7223



Basic Information


Item Value
RNA id TU7223
length 214
lncRNA type intronic
GC content 0.45
exon number 1
gene id G6535
representative True

Chromosome Information


Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 9678906 ~ 9679119 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CCCAAATTCAGTATCTCAGAAAATTAGAATATTGTGAAAAGGTTTAATATTGAAGACACCTGGTGCCACACTCTAATCAGCTAATTAACTCAAAACACCTGCAAAGGCCTTTAAATGATCTCTCAGTCTAGTTCTGTAGGCTACACAATCATGGGGAAGACTGCTGACTTGACAGTTGTCCAAAAGACGACCATTGACACCTTGCACAGGGAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU7220 lncRNA downstream 5354 9672940 ~ 9673552 (-) True G6532
TU7216 lncRNA downstream 17946 9660756 ~ 9660960 (-) True G6528
TU7215 lncRNA downstream 18456 9660225 ~ 9660450 (-) True G6527
TU7209 lncRNA downstream 27171 9651524 ~ 9651735 (-) True G6521
TU7148 lncRNA downstream 92314 9570858 ~ 9586592 (-) True G6460
TU7321 lncRNA upstream 30303 9709422 ~ 9787443 (-) True G6627
TU7375 lncRNA upstream 121374 9800493 ~ 9800723 (-) True G6671
TU7385 lncRNA upstream 134408 9813527 ~ 9813864 (-) True G6681
TU7396 lncRNA upstream 150982 9830101 ~ 9830575 (-) True G6691
TU7457 lncRNA upstream 184232 9863351 ~ 9910273 (-) True G6747
CI01000000_09530735_09630567.mRNA mRNA downstream 48339 9530735 ~ 9630567 (-) True CI01000000_09530735_09630567
CI01000000_09506970_09508416.mRNA mRNA downstream 169580 9506292 ~ 9509326 (-) True CI01000000_09506970_09508416
CI01000000_09469075_09494668.mRNA mRNA downstream 182926 9469020 ~ 9495980 (-) True CI01000000_09469075_09494668
CI01000000_09451613_09452011.mRNA mRNA downstream 226720 9450612 ~ 9452186 (-) False CI01000000_09451613_09452011
CI01000000_09421380_09425048.mRNA mRNA downstream 253858 9421277 ~ 9425048 (-) True CI01000000_09421380_09425048
CI01000000_09913788_09975299.mRNA mRNA upstream 234540 9913659 ~ 9976167 (-) True CI01000000_09913788_09975299
CI01000000_10096840_10101549.mRNA mRNA upstream 417605 10096724 ~ 10101758 (-) True CI01000000_10096840_10101549
CI01000000_10106854_10121986.mRNA mRNA upstream 427538 10106657 ~ 10123017 (-) True CI01000000_10106854_10121986
CI01000000_10151976_10164598.mRNA mRNA upstream 472816 10151935 ~ 10164862 (-) True CI01000000_10151976_10164598
CI01000000_10168220_10187727.mRNA mRNA upstream 489004 10168123 ~ 10187937 (-) True CI01000000_10168220_10187727
TU4363 other downstream 3275381 6157013 ~ 6403525 (-) False G3931
TU4125 other downstream 3678137 6000407 ~ 6000769 (-) True G3716
TU4058 other downstream 4138025 5540463 ~ 5540881 (-) True G3650
TU3917 other downstream 4212390 5465454 ~ 5465799 (-) True G3519
TU3038 other downstream 5288754 4386383 ~ 4390152 (-) True G2730
TU8769 other upstream 725209 10404328 ~ 10414513 (-) True G7948
TU8770 other upstream 1145292 10827450 ~ 10827595 (-) True G7949
TU8948 other upstream 1361150 11040269 ~ 11040909 (-) True G8125
TU9592 other upstream 3606205 13285324 ~ 13311429 (-) False G8699
TU9587 other upstream 3625157 13304276 ~ 13311429 (-) True G8699

Expression Profile