Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00012849 |
| length | 745 |
| RNA type | processed_transcript |
| GC content | 0.54 |
| exon number | 9 |
| gene id | XLOC_006653 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007124.7 |
| NCBI id | CM002897.2 |
| chromosome length | 52186027 |
| location | 27631926 ~ 27767443 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006886 | intracellular protein transport | biological_process |
| GO:0006887 | exocytosis | biological_process |
| GO:0042391 | regulation of membrane potential | biological_process |
| GO:0048167 | regulation of synaptic plasticity | biological_process |
| GO:0048791 | calcium ion-regulated exocytosis of neurotransmitter | biological_process |
| GO:2000300 | regulation of synaptic vesicle exocytosis | biological_process |
| GO:0050806 | positive regulation of synaptic transmission | biological_process |
| GO:0098831 | presynaptic active zone cytoplasmic component | cellular_component |
| GO:0042734 | presynaptic membrane | cellular_component |
| GO:0048786 | presynaptic active zone | cellular_component |
| GO:0048788 | cytoskeleton of presynaptic active zone | cellular_component |
| GO:0045202 | synapse | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0044325 | ion channel binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-090312-135 | Predicted to enable transmembrane transporter binding activity. Predicted to be involved in calcium ion-regulated exocytosis of neurotransmitter; modulation of chemical synaptic transmission; and regulation of membrane potential. Predicted to act upstream of or within exocytosis and intracellular protein transport. Predicted to be located in membrane and synapse. Predicted to be active in cytoskeleton of presynaptic active zone and presynaptic membrane. Human ortholog(s) of this gene implicated in cone-rod dystrophy 7. Orthologous to human RIMS1 (regulating synaptic membrane exocytosis 1). |
| ensembl_id | ENSDART00000146051 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00013806 | lncRNA | downstream | 373470 | 27271338 ~ 27277709 (-) | True | XLOC_006650 |
| TCONS_00013805 | lncRNA | downstream | 423429 | 27227361 ~ 27227750 (-) | True | XLOC_006649 |
| TCONS_00012837 | lncRNA | downstream | 612772 | 27000394 ~ 27038407 (-) | True | XLOC_006648 |
| TCONS_00012836 | lncRNA | downstream | 852006 | 26797396 ~ 26799173 (-) | True | XLOC_006647 |
| TCONS_00012835 | lncRNA | downstream | 865095 | 26780568 ~ 26786084 (-) | False | XLOC_006647 |
| TCONS_00013807 | lncRNA | upstream | 138343 | 27801415 ~ 27816607 (-) | False | XLOC_006655 |
| TCONS_00013808 | lncRNA | upstream | 138343 | 27801415 ~ 27816617 (-) | False | XLOC_006655 |
| TCONS_00013809 | lncRNA | upstream | 138343 | 27801415 ~ 27816641 (-) | True | XLOC_006655 |
| TCONS_00013810 | lncRNA | upstream | 764405 | 28427477 ~ 28444818 (-) | True | XLOC_006663 |
| TCONS_00013811 | lncRNA | upstream | 834730 | 28497802 ~ 28513141 (-) | False | XLOC_006664 |
| TCONS_00012843 | mRNA | downstream | 29933 | 27378857 ~ 27621246 (-) | False | XLOC_006652 |
| TCONS_00012842 | mRNA | downstream | 30364 | 27378857 ~ 27620815 (-) | False | XLOC_006652 |
| TCONS_00012841 | mRNA | downstream | 263082 | 27378857 ~ 27388097 (-) | False | XLOC_006652 |
| TCONS_00012844 | mRNA | downstream | 266482 | 27379618 ~ 27384697 (-) | True | XLOC_006652 |
| TCONS_00012839 | mRNA | downstream | 297146 | 27332656 ~ 27354033 (-) | False | XLOC_006651 |
| TCONS_00012851 | mRNA | upstream | 3201 | 27666273 ~ 27767330 (-) | False | XLOC_006653 |
| TCONS_00012852 | mRNA | upstream | 3274 | 27666346 ~ 27675212 (-) | True | XLOC_006653 |
| TCONS_00012854 | mRNA | upstream | 237374 | 27900446 ~ 27916565 (-) | False | XLOC_006656 |
| TCONS_00012855 | mRNA | upstream | 238694 | 27901766 ~ 27916439 (-) | True | XLOC_006656 |
| TCONS_00012856 | mRNA | upstream | 346655 | 28009727 ~ 28263868 (-) | False | XLOC_006657 |
| TCONS_00012832 | other | downstream | 1083995 | 26567066 ~ 26567184 (-) | True | XLOC_006646 |
| TCONS_00012810 | other | downstream | 2102565 | 25545676 ~ 25548614 (-) | False | XLOC_006634 |
| TCONS_00012805 | other | downstream | 2120531 | 25530534 ~ 25530648 (-) | True | XLOC_006633 |
| TCONS_00012791 | other | downstream | 2451954 | 25058733 ~ 25199225 (-) | False | XLOC_006628 |
| TCONS_00012793 | other | downstream | 2453116 | 25191576 ~ 25198063 (-) | True | XLOC_006628 |
| TCONS_00012853 | other | upstream | 27088 | 27690160 ~ 27690276 (-) | True | XLOC_006654 |
| TCONS_00012858 | other | upstream | 516362 | 28179434 ~ 28179550 (-) | True | XLOC_006658 |
| TCONS_00012861 | other | upstream | 613826 | 28276898 ~ 28295414 (-) | False | XLOC_006661 |
| TCONS_00012862 | other | upstream | 622790 | 28285862 ~ 28417158 (-) | True | XLOC_006661 |
| TCONS_00012879 | other | upstream | 1843588 | 29506660 ~ 29507601 (-) | False | XLOC_006678 |
