RNA id: TU8817


Basic Information

Item Value
RNA id TU8817
length 870
lncRNA type antisense_over
GC content 0.46
exon number 1
gene id G7996
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 10795360 ~ 10796229 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTTCTCTGCGCTCGCTTGAGCGGACGGAGATCGAGAGGGAGGACGGGGTTCTTGTGTGTACTCTGCGTACCTAGTATTTATCCTTTAAAGGGCGCTACTGCTATTCGATTGTGTGTTAGACAGATTAAACCAATTATAAAAGTTCACCTAAAACCTATAGTGTCATTTTCGTCTCATAGAAAGGGCAACCCCCTCCTCGCCTGATCTCGTCTAGCTGTCTTTGGTGGGGGTGGGGAGTAGCTTGGGTTCCGTGTGATTTTTATAATAATTGTGCCTCCCCCTGACCATCGAGAAATCCATCCTCGTCCGCTTTCCCCTCCTCTTGTTTATCTTCTTTGAGAGACTATAGGCAAGCGCCATGTTAATACACCAAACCGCCCTAGACCATGACAACGGCGGCACAGACGAGAGAGGAAAAGCAGCGTTGTCAGGCACTGGCTCCTCCTAAATCGTGCTCCTCGGTTTCCGTGGAGCCTCGCTGCACATTCCCTTTGATTTTGTGAATGTGAGAAAGGGACGTACCTGCTAAGCAATCCTGTTCACCATAATCACAGACACTGAAAGTGCGGCGATACCTCATAAATGTAGCAGTGTTCACGATATTACTCTGCAAGAAAGCTAGCGCAAATAAATATTGCTACAGTGTGCTAATTTCTGCTGGGAATAATCTGTGAACAAGTGCCGATGATACAGAACCCTTTATTATGCTCGTTTAGCCGCAGTTTTACATAACTTCAAATCCAACAGCTTGCTCAGAGTGAGAAACGTGTCATTGGAGATCTATCCCTAACATAATGTAGAGCATATTCTACTGCATTGTGAACCACACGGTTTCTGTTTGTTATGGTCGTTGGTATTCACAACAAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8806 lncRNA downstream 21181 10772427 ~ 10774179 (-) True G7985
TU8812 lncRNA downstream 76082 10704899 ~ 10719278 (-) True G7991
TU8789 lncRNA downstream 206149 10585597 ~ 10589211 (-) True G7968
TU8849 lncRNA downstream 361074 10434021 ~ 10434286 (-) True G8028
TU8767 lncRNA downstream 424213 10369020 ~ 10371147 (-) True G7946
TU8903 lncRNA upstream 119781 10916010 ~ 10916315 (-) True G8080
TU8904 lncRNA upstream 120756 10916985 ~ 10917184 (-) True G8081
TU8905 lncRNA upstream 121465 10917694 ~ 10917894 (-) True G8082
TU8910 lncRNA upstream 124799 10921028 ~ 10921235 (-) True G8087
TU8911 lncRNA upstream 125839 10922068 ~ 10922557 (-) True G8088
CI01000000_10785646_10788722.mRNA mRNA downstream 6638 10785510 ~ 10788722 (-) True CI01000000_10785646_10788722
CI01000000_10745761_10748814.mRNA mRNA downstream 44154 10745535 ~ 10751206 (-) True CI01000000_10745761_10748814
CI01000000_10734747_10737823.mRNA mRNA downstream 57537 10734550 ~ 10737823 (-) True CI01000000_10734747_10737823
CI01000000_10722125_10723905.mRNA mRNA downstream 71308 10722056 ~ 10724052 (-) True CI01000000_10722125_10723905
CI01000000_10612377_10662964.mRNA mRNA downstream 132396 10612377 ~ 10662964 (-) True CI01000000_10612377_10662964
CI01000000_10824957_10825464.mRNA mRNA upstream 28095 10824324 ~ 10825464 (-) False CI01000000_10824957_10825464
CI01000000_10865036_10883334.mRNA mRNA upstream 68791 10865020 ~ 10883334 (-) True CI01000000_10865036_10883334
CI01000000_10945347_10977876.mRNA mRNA upstream 147653 10943882 ~ 10977876 (-) True CI01000000_10945347_10977876
CI01000000_10979945_10982820.mRNA mRNA upstream 183410 10979639 ~ 10982820 (-) True CI01000000_10979945_10982820
CI01000000_10998739_11000052.mRNA mRNA upstream 202235 10998464 ~ 11001881 (-) True CI01000000_10998739_11000052
TU8769 other downstream 380847 10404328 ~ 10414513 (-) True G7948
TU4363 other downstream 4391835 6157013 ~ 6403525 (-) False G3931
TU4125 other downstream 4794591 6000407 ~ 6000769 (-) True G3716
TU4058 other downstream 5254479 5540463 ~ 5540881 (-) True G3650
TU3917 other downstream 5328844 5465454 ~ 5465799 (-) True G3519
TU8770 other upstream 28182 10827450 ~ 10827595 (-) True G7949
TU8948 other upstream 244040 11040269 ~ 11040909 (-) True G8125
TU9592 other upstream 2489095 13285324 ~ 13311429 (-) False G8699
TU9587 other upstream 2508047 13304276 ~ 13311429 (-) True G8699
TU9950 other upstream 2930571 13726800 ~ 13727090 (-) True G9036

Expression Profile