RNA id: TU8957


Basic Information

Item Value
RNA id TU8957
length 950
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G8132
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 11056844 ~ 11057793 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGCATGTCACATGCACTAGGCAACAACCAGACTGCTACAGGGGCTCTAAAAGTCACCTCACCCAAATCAGACAGAAGTAATACTTCTATATTCATCCTTGGGTTATTTTAAATGCTTGGGGTGGTGAGAGTAAGCAGATATGGCAAGTAAGAGATTCAGAGGTAAAAATGTTTAGTGCTTTAATATGTGATGGAAACAAACCGGACAGACAAGATTGAAGAGCCTCTACTCTGACACGGTTGTCTCTTATTGTGCACATTTCAGTCATTCTGACGTGCATTCATATCTCTCTATTCCTGCCTGACACATTTTCTTTTCAATTAACCATTAGACCTGTCATCTCCTTTACTGCACACACACACACTCGCTCTTTTTGAAAGAAAATTGCTCTCCAATTAAAAGTAATCAAAGGCTGATGAGTAAAAAGCCTGGCTATTCTCATGCTTTTATTTATTTATATATTTTTAAGCGATCTCTTCTATACTGAATGGTTTTTGATGGCCAGTGGATTGGCAGAACAAAGAAATTAATGTGTGAAGTCACTATTTATTTATTTTTATTTATTTTAACGTCAAGTCAATGGCAAGTTGTTGCATCATGAATGGACGAGTAGGTCGTAAATTAGAGCTATCCACACAAACTCAACTTATTGCCACAGATATTAAAACGGCATCCTACATAACATCCTCTCAATTTGAAAAGTTTGACAGCAAACCACAAAGTGATATGCTTTGAATTAATATGGAATGACACGTTCTCCATCAAGACCACTTTGGGACCTGGATAAGAGGCAGGGACAGCTGCGTAATTACTACTCTCACATGTATAGAAAGTAAATAATTTATTGCCTATAGTAGCCATTAACTGAACAAACACAATAAGCTCTATAACTACCCAGCAATTCCGTACGTCTGTTAAAGACAGAGCATTTTACATTCTGCTGAGTCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8956 lncRNA downstream 1581 11054713 ~ 11055263 (-) True G8131
TU8959 lncRNA downstream 5812 11050651 ~ 11051032 (-) True G8134
TU8945 lncRNA downstream 21617 11034859 ~ 11035227 (-) True G8122
TU8937 lncRNA downstream 31951 11024606 ~ 11024893 (-) True G8114
TU8917 lncRNA downstream 125114 10931206 ~ 10931730 (-) True G8094
TU8960 lncRNA upstream 12448 11070241 ~ 11070461 (-) True CI01000000_11066680_11069224
TU8969 lncRNA upstream 41399 11099192 ~ 11099553 (-) True G8142
TU8982 lncRNA upstream 76607 11134400 ~ 11134697 (-) True G8155
TU8988 lncRNA upstream 86958 11144751 ~ 11144973 (-) True G8161
TU8999 lncRNA upstream 117961 11175754 ~ 11176024 (-) True G8172
CI01000000_10998739_11000052.mRNA mRNA downstream 54963 10998464 ~ 11001881 (-) True CI01000000_10998739_11000052
CI01000000_10979945_10982820.mRNA mRNA downstream 74024 10979639 ~ 10982820 (-) True CI01000000_10979945_10982820
CI01000000_10945347_10977876.mRNA mRNA downstream 78968 10943882 ~ 10977876 (-) True CI01000000_10945347_10977876
CI01000000_10865036_10883334.mRNA mRNA downstream 173510 10865020 ~ 10883334 (-) True CI01000000_10865036_10883334
CI01000000_10824957_10825464.mRNA mRNA downstream 231380 10824324 ~ 10825464 (-) False CI01000000_10824957_10825464
CI01000000_11066680_11069224.mRNA mRNA upstream 8664 11066457 ~ 11070260 (-) False CI01000000_11066680_11069224
CI01000000_11108925_11118542.mRNA mRNA upstream 50888 11108681 ~ 11119357 (-) True CI01000000_11108925_11118542
CI01000000_11192339_11212425.mRNA mRNA upstream 134356 11192149 ~ 11212438 (-) True CI01000000_11192339_11212425
CI01000000_11229749_11245295.mRNA mRNA upstream 171790 11229583 ~ 11253442 (-) True CI01000000_11229749_11245295
CI01000000_11318462_11334893.mRNA mRNA upstream 259918 11317711 ~ 11335314 (-) True CI01000000_11318462_11334893
TU8948 other downstream 15935 11040269 ~ 11040909 (-) True G8125
TU8770 other downstream 229249 10827450 ~ 10827595 (-) True G7949
TU8769 other downstream 642331 10404328 ~ 10414513 (-) True G7948
TU4363 other downstream 4653319 6157013 ~ 6403525 (-) False G3931
TU4125 other downstream 5056075 6000407 ~ 6000769 (-) True G3716
TU9592 other upstream 2227531 13285324 ~ 13311429 (-) False G8699
TU9587 other upstream 2246483 13304276 ~ 13311429 (-) True G8699
TU9950 other upstream 2669007 13726800 ~ 13727090 (-) True G9036
TU10603 other upstream 3283209 14341002 ~ 14346534 (-) True G9602
TU10602 other upstream 3327564 14483120 ~ 14498594 (-) True G9601

Expression Profile