RNA id: TU8988


Basic Information

Item Value
RNA id TU8988
length 223
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G8161
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 11144751 ~ 11144973 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTAATGGTCACTAAGATGTCAGCCATAGTCTTTACACATCAGTCACCGAGGGCTGTCTTATTTATTTTTACCGTTGTTCTCGCCTCTTCTCTTCTTTGTTTTTTCCTCTTTTCTTGTGTCAGGTATTTAAGCAGGCTGTCAGTTTTATAGGGCCTGGTGAATGGGGTTGATAGGGGAGACTCTCAAAGGACTGCATGTGACCCATCTGCCCACAACACCCTCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8982 lncRNA downstream 10054 11134400 ~ 11134697 (-) True G8155
TU8969 lncRNA downstream 45198 11099192 ~ 11099553 (-) True G8142
TU8960 lncRNA downstream 74290 11070241 ~ 11070461 (-) True CI01000000_11066680_11069224
TU8957 lncRNA downstream 86958 11056844 ~ 11057793 (-) True G8132
TU8956 lncRNA downstream 89488 11054713 ~ 11055263 (-) True G8131
TU8999 lncRNA upstream 30781 11175754 ~ 11176024 (-) True G8172
TU9007 lncRNA upstream 47994 11192967 ~ 11193175 (-) True G8180
TU9088 lncRNA upstream 469753 11614726 ~ 11614965 (-) True G8251
TU9083 lncRNA upstream 473881 11618854 ~ 11619745 (-) True G8246
TU9090 lncRNA upstream 475128 11620101 ~ 11620367 (-) True G8253
CI01000000_11108925_11118542.mRNA mRNA downstream 25394 11108681 ~ 11119357 (-) True CI01000000_11108925_11118542
CI01000000_11066680_11069224.mRNA mRNA downstream 74491 11066457 ~ 11070260 (-) False CI01000000_11066680_11069224
CI01000000_10998739_11000052.mRNA mRNA downstream 142870 10998464 ~ 11001881 (-) True CI01000000_10998739_11000052
CI01000000_10979945_10982820.mRNA mRNA downstream 161931 10979639 ~ 10982820 (-) True CI01000000_10979945_10982820
CI01000000_10945347_10977876.mRNA mRNA downstream 166875 10943882 ~ 10977876 (-) True CI01000000_10945347_10977876
CI01000000_11192339_11212425.mRNA mRNA upstream 47176 11192149 ~ 11212438 (-) True CI01000000_11192339_11212425
CI01000000_11229749_11245295.mRNA mRNA upstream 84610 11229583 ~ 11253442 (-) True CI01000000_11229749_11245295
CI01000000_11318462_11334893.mRNA mRNA upstream 172738 11317711 ~ 11335314 (-) True CI01000000_11318462_11334893
CI01000000_11344232_11366443.mRNA mRNA upstream 198336 11343309 ~ 11366443 (-) True CI01000000_11344232_11366443
CI01000000_11384532_11410549.mRNA mRNA upstream 239559 11384532 ~ 11410549 (-) True CI01000000_11384532_11410549
TU8948 other downstream 103842 11040269 ~ 11040909 (-) True G8125
TU8770 other downstream 317156 10827450 ~ 10827595 (-) True G7949
TU8769 other downstream 730238 10404328 ~ 10414513 (-) True G7948
TU4363 other downstream 4741226 6157013 ~ 6403525 (-) False G3931
TU4125 other downstream 5143982 6000407 ~ 6000769 (-) True G3716
TU9592 other upstream 2140351 13285324 ~ 13311429 (-) False G8699
TU9587 other upstream 2159303 13304276 ~ 13311429 (-) True G8699
TU9950 other upstream 2581827 13726800 ~ 13727090 (-) True G9036
TU10603 other upstream 3196029 14341002 ~ 14346534 (-) True G9602
TU10602 other upstream 3240384 14483120 ~ 14498594 (-) True G9601

Expression Profile