RNA id: TU9007


Basic Information

Item Value
RNA id TU9007
length 209
lncRNA type intronic
GC content 0.30
exon number 1
gene id G8180
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 11192967 ~ 11193175 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTTTTTGAAGTCTCTTATGCTCAGCAAGGCTGCATGTATTTAATCAAAAAAACAGTAAAATCAGTAACATTGTTAAAAAAAAAAAAAAAAAAAAATTGTAATGTAGTTTATTCCTGTGATGCAAAGCTGAATTTTCAACATTACTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTCTAATATGCTGATTTGATGCTCGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8999 lncRNA downstream 16943 11175754 ~ 11176024 (-) True G8172
TU8988 lncRNA downstream 47994 11144751 ~ 11144973 (-) True G8161
TU8982 lncRNA downstream 58270 11134400 ~ 11134697 (-) True G8155
TU8969 lncRNA downstream 93414 11099192 ~ 11099553 (-) True G8142
TU8960 lncRNA downstream 122506 11070241 ~ 11070461 (-) True CI01000000_11066680_11069224
TU9088 lncRNA upstream 421551 11614726 ~ 11614965 (-) True G8251
TU9083 lncRNA upstream 425679 11618854 ~ 11619745 (-) True G8246
TU9090 lncRNA upstream 426926 11620101 ~ 11620367 (-) True G8253
TU9091 lncRNA upstream 427384 11620559 ~ 11620817 (-) True G8254
TU9092 lncRNA upstream 428007 11621182 ~ 11621419 (-) True G8255
CI01000000_11108925_11118542.mRNA mRNA downstream 73610 11108681 ~ 11119357 (-) True CI01000000_11108925_11118542
CI01000000_11066680_11069224.mRNA mRNA downstream 122707 11066457 ~ 11070260 (-) False CI01000000_11066680_11069224
CI01000000_10998739_11000052.mRNA mRNA downstream 191086 10998464 ~ 11001881 (-) True CI01000000_10998739_11000052
CI01000000_10979945_10982820.mRNA mRNA downstream 210147 10979639 ~ 10982820 (-) True CI01000000_10979945_10982820
CI01000000_10945347_10977876.mRNA mRNA downstream 215091 10943882 ~ 10977876 (-) True CI01000000_10945347_10977876
CI01000000_11229749_11245295.mRNA mRNA upstream 36408 11229583 ~ 11253442 (-) True CI01000000_11229749_11245295
CI01000000_11318462_11334893.mRNA mRNA upstream 124536 11317711 ~ 11335314 (-) True CI01000000_11318462_11334893
CI01000000_11344232_11366443.mRNA mRNA upstream 150134 11343309 ~ 11366443 (-) True CI01000000_11344232_11366443
CI01000000_11384532_11410549.mRNA mRNA upstream 191357 11384532 ~ 11410549 (-) True CI01000000_11384532_11410549
CI01000000_11515517_11516404.mRNA mRNA upstream 322177 11515352 ~ 11516436 (-) True CI01000000_11515517_11516404
TU8948 other downstream 152058 11040269 ~ 11040909 (-) True G8125
TU8770 other downstream 365372 10827450 ~ 10827595 (-) True G7949
TU8769 other downstream 778454 10404328 ~ 10414513 (-) True G7948
TU4363 other downstream 4789442 6157013 ~ 6403525 (-) False G3931
TU4125 other downstream 5192198 6000407 ~ 6000769 (-) True G3716
TU9592 other upstream 2092149 13285324 ~ 13311429 (-) False G8699
TU9587 other upstream 2111101 13304276 ~ 13311429 (-) True G8699
TU9950 other upstream 2533625 13726800 ~ 13727090 (-) True G9036
TU10603 other upstream 3147827 14341002 ~ 14346534 (-) True G9602
TU10602 other upstream 3192182 14483120 ~ 14498594 (-) True G9601

Expression Profile