RNA id: TCONS_00013808


Basic Information

Item Value
RNA id TCONS_00013808
length 2139
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id XLOC_006655
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 27801415 ~ 27816641 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTCACCAGACAACGTGGAGATGTCGTGGACGTGGTCTCATCCAAACAGATTTATCGCACAGCATTGAGTTAAAGTGACCACAGAATAAAACAGTGGGAAGCCCTCTGAATTTTGGAGTTCCTCTGCCACCTAGCGGCCACGCGTGAGAGATGCTTAAGCTATGACATCACCAGCAAAATTGGGTAAAGGTCAGTGTTGTAGAAGAGAATGGCAACCAAAACACGATTAGGCGTGTTCACAAATACCATTGAGAGCATGGGATGTTGTGCATATCTCAGTGGAGTTGGGTTTAGCCTTCATGAGAGCAGTCTGAACATATTTGTCAAAGGAAGCAGGAGGAGAGACGCCCATCGGAAGGGTGCCTCTGTGTTCCTCAGCGGGTATAAATAGTCACTTCCTCTTAGGCACTTCGGATGGAGTTGTCCCACCCTGATGGGGTCAGAAAGCTTCAAAGAGACCTGAACTTCAGCCTGAGAGACTTAATGACAGGCCACTCGCCTTCAGGGCCCTTTAAACGTTCACAATGGAGTTCACTTCCTGTGTGCGTTACAAAACTCTCTTATCACTCCACAAACAATCCAGTCACGGAAGTAGCCGTCTTCTATAGTCCTGATTGAGCTCACCGGCTGGTTCTGCTCAGTGGGTACAAGGACTGCGGGGAGAgtttgtttgtgtgagtaaatTGAATGCGAGGGGTCCGGAGTCGATGTCCTGAGGGACAGAGGAGAGGCGGAGGCACCGACTGCTCCCACGGACCAGCGTCATCCGAGGAGCCTCTTCATGGCTCCTGGCTCTGATCCAGGACCCCCGGCTCACCCCTCCTCCCAAGGATGTGGCCGCTCCCGGCCCCTGTGAACCGGCCTGAATGAGAGCTTTCACATTCTTCAGTCCCCTTTTCCTCTCATTGGACAAGAAGACTCTTTTTCTGCCCCTCTTCTCTGAATCTTCTGGGAAAAGTCATCAGACTTGGTGCCAGCCTATGGGCATAAAAGGGGTGGAGGACAAGAAACACAGAGAAAGAGTGATTGAGTTTACGAGGAAGCAGGACAAGAGGGGACAGAGCCATTACACTCGAGGGGCTGAAAAATACACAGGAATAAGTTGATGAAAGGTTTAGTGAATGTAGACTTATAAAGCTTGCAAGGCTTTGCACAAAagattttaatacatttgctGGGAGATTGTAATACAATATTGTGTACATTTGGAAATCTTTAATAAGAAACCGAAGCAGtaagagtctttttttttcttctcgttTATTTACATTCTAGAATTCTAGTTTGTGTGTTCTGGAATGCATTTGACATAATTTGGATGCAAGGCCTCATGATGTTCCTCCACTTGAGCCCCTTGGTGCTGTTTAGGCATTTTGACagaaaatgttcataaaaaaaaaaaaaaagattttaagttCATGGGAATGTGGCACGAGTAAAGGTTGCCTATTTATTTGGTCTGCAATGGAAATAAATGGGAAACTAATTTCTTTGAATGAAACATTTGGTACTGCACCCCCcttaaaaaatataatcaaaaattgtttaatttatcaGCCTTAAATTTGAAAACAACTTCTATTTAAGATTTATAACTTTTTAAGTTGGAAATGTCATTTTATGTTAATGCCCAAAAAGTGGttatatgaaatataatttatttcactGAAACAAAAATGTAGGTTGTATTTGACAACTCAAATCAAGaggataaacaaatacagtatagcatatatttaaaaagaattgtacaattttttaaattatagaaaatattcaattattttaacagttcagggtggcttagtggttagcactgtcatcttacagcaagaaggttgctggtttgagtcccaacagGGCCAATGTCATTGTgttttgtgtggagtttcctCTTAGTGCTCCCGTTACCTCgatgtccaaagacatgaggtataggtgaattgaataaacaaaattggccatggtgtatgtgtgtgagaatgtgagagtgtgtgggtgattcctagtattgggttgcagctggaaggacatccgctgtgtaaaatatatgccagaatagttcattccgctgtggtgacccctgataataaaagggactaacctgaaggaaaattaataaacgagttacataattat

Function

GO:

id name namespace
GO:0046907 intracellular transport biological_process
GO:0047496 vesicle transport along microtubule biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013806 lncRNA downstream 523706 27271338 ~ 27277709 (-) True XLOC_006650
TCONS_00013805 lncRNA downstream 573665 27227361 ~ 27227750 (-) True XLOC_006649
TCONS_00012837 lncRNA downstream 763008 27000394 ~ 27038407 (-) True XLOC_006648
TCONS_00012836 lncRNA downstream 1002242 26797396 ~ 26799173 (-) True XLOC_006647
TCONS_00012835 lncRNA downstream 1015331 26780568 ~ 26786084 (-) False XLOC_006647
TCONS_00013810 lncRNA upstream 610860 28427477 ~ 28444818 (-) True XLOC_006663
TCONS_00013811 lncRNA upstream 681185 28497802 ~ 28513141 (-) False XLOC_006664
TCONS_00012864 lncRNA upstream 683710 28500327 ~ 28513347 (-) True XLOC_006664
TCONS_00013812 lncRNA upstream 729795 28546412 ~ 28572464 (-) True XLOC_006665
TCONS_00013813 lncRNA upstream 860504 28677121 ~ 28680434 (-) False XLOC_006668
TCONS_00012847 mRNA downstream 33972 27631926 ~ 27767443 (-) False XLOC_006653
TCONS_00012846 mRNA downstream 33972 27631926 ~ 27767443 (-) False XLOC_006653
TCONS_00012851 mRNA downstream 34085 27666273 ~ 27767330 (-) False XLOC_006653
TCONS_00012852 mRNA downstream 126203 27666346 ~ 27675212 (-) True XLOC_006653
TCONS_00012845 mRNA downstream 140460 27631926 ~ 27660955 (-) False XLOC_006653
TCONS_00012854 mRNA upstream 83829 27900446 ~ 27916565 (-) False XLOC_006656
TCONS_00012855 mRNA upstream 85149 27901766 ~ 27916439 (-) True XLOC_006656
TCONS_00012856 mRNA upstream 193110 28009727 ~ 28263868 (-) False XLOC_006657
TCONS_00012857 mRNA upstream 193112 28009729 ~ 28263856 (-) True XLOC_006657
TCONS_00012859 mRNA upstream 448217 28264834 ~ 28265919 (-) True XLOC_006659
TCONS_00012853 other downstream 111139 27690160 ~ 27690276 (-) True XLOC_006654
TCONS_00012849 other downstream 138343 27651179 ~ 27663072 (-) False XLOC_006653
TCONS_00012832 other downstream 1234231 26567066 ~ 26567184 (-) True XLOC_006646
TCONS_00012810 other downstream 2252801 25545676 ~ 25548614 (-) False XLOC_006634
TCONS_00012805 other downstream 2270767 25530534 ~ 25530648 (-) True XLOC_006633
TCONS_00012858 other upstream 362817 28179434 ~ 28179550 (-) True XLOC_006658
TCONS_00012861 other upstream 460281 28276898 ~ 28295414 (-) False XLOC_006661
TCONS_00012862 other upstream 469245 28285862 ~ 28417158 (-) True XLOC_006661
TCONS_00012879 other upstream 1690043 29506660 ~ 29507601 (-) False XLOC_006678
TCONS_00012895 other upstream 2815488 30632105 ~ 30632219 (-) True XLOC_006693