RNA id: TU7888


Basic Information

Item Value
RNA id TU7888
length 389
lncRNA type intronic
GC content 0.41
exon number 1
gene id G7151
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 11243558 ~ 11243946 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCAGATTTTCATATTGGGTAACATGACAAGCAATTATTCGTACTTGGATGACCCCATTACTAAACAATACATTAGATTAAACTGTGAGTCACCGCAATTGAGACCACAACAAATAAGTCTGAACCATCACAGTCTTCTAGGACCAGATTTCAGCCAGGAAGTGGCTAATATCTCAGAAAGAGGCCACGCAGGCACAGCATGATGAGGCTAGCCCAGATTACTGCCGTTTCTGGGTTGCTGAAAGATTGTACCCTACTTTACCATCATGGGACTGAGTGAGTGGAGATCAGAAATAAGAAAGACACCATATATACAACAGGTGGCCCAGTTACAGAAAGTTTTAAGAAACTATAATGCCAACTTTTACCCGTAGAGTAACACATTCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7887 lncRNA upstream 33 11243300 ~ 11243525 (+) True G7150
TU7886 lncRNA upstream 489 11242658 ~ 11243069 (+) True G7149
TU7885 lncRNA upstream 1612 11241368 ~ 11241946 (+) True G7148
TU7884 lncRNA upstream 2345 11240879 ~ 11241213 (+) True G7147
TU7883 lncRNA upstream 3723 11239393 ~ 11239835 (+) True G7146
TU7889 lncRNA downstream 235 11244181 ~ 11244416 (+) True G7152
TU7892 lncRNA downstream 1689 11245635 ~ 11246588 (+) True G7154
TU7893 lncRNA downstream 2896 11246842 ~ 11247832 (+) True G7155
TU7894 lncRNA downstream 3979 11247925 ~ 11248143 (+) True G7156
TU7895 lncRNA downstream 5031 11248977 ~ 11249463 (+) True G7157
CI01000000_11137352_11139990.mRNA mRNA upstream 103533 11136838 ~ 11140025 (+) True CI01000000_11137352_11139990
CI01000000_11094594_11098001.mRNA mRNA upstream 145335 11092597 ~ 11098223 (+) False CI01000000_11094594_11098001
CI01000000_11075141_11078086.mRNA mRNA upstream 165167 11074854 ~ 11078391 (+) True CI01000000_11075141_11078086
CI01000000_10984317_10995531.mRNA mRNA upstream 247964 10984317 ~ 10995594 (+) True CI01000000_10984317_10995531
CI01000000_10938621_10941220.mRNA mRNA upstream 301960 10938085 ~ 10941598 (+) True CI01000000_10938621_10941220
CI01000000_11272091_11279011.mRNA mRNA downstream 27947 11271893 ~ 11279124 (+) False CI01000000_11272091_11279011
CI01000000_11335685_11340519.mRNA mRNA downstream 90456 11334402 ~ 11340732 (+) True CI01000000_11335685_11340519
CI01000000_11381704_11382225.mRNA mRNA downstream 135931 11379877 ~ 11382288 (+) True CI01000000_11381704_11382225
CI01000000_11479843_11484323.mRNA mRNA downstream 234081 11478027 ~ 11485062 (+) True CI01000000_11479843_11484323
CI01000000_11569924_11573883.mRNA mRNA downstream 325978 11569924 ~ 11574833 (+) True CI01000000_11569924_11573883
TU7753 other upstream 262686 10978489 ~ 10980872 (+) True G7018
TU7538 other upstream 810540 10427223 ~ 10433018 (+) True G6820
TU7529 other upstream 921879 10204831 ~ 10321679 (+) True G6811
TU3177 other upstream 6517076 4725986 ~ 4726482 (+) False G2850
TU3086 other upstream 6789326 4453778 ~ 4454232 (+) True G2774
TU7890 other downstream 511 11244457 ~ 11245633 (+) True G7153
TU8274 other downstream 892576 12136522 ~ 12137008 (+) True G7514
TU8285 other downstream 934423 12178369 ~ 12179008 (+) True G7522
TU10171 other downstream 2983491 14227437 ~ 14234941 (+) True G9201
TU11228 other downstream 4686320 15930266 ~ 15930562 (+) True G10201

Expression Profile