RNA id: TU7902


Basic Information

Item Value
RNA id TU7902
length 326
lncRNA type inter_gene
GC content 0.65
exon number 1
gene id G7164
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 11254924 ~ 11255249 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCTAACTCACATCTATCTGCCCTCTCAAAGCATTCACCTTTTAAACATCCTTAGGGACCACATCCAGGCAAGAAATGCTGTCTGTAAATGTGAGCACAAAAGCCCCTGTGTTATAAATATAAAATACACTAAAAAATACAGTGCTGTGCAGAAGGTCCTTCACTCTGCTCCACCCATCTGAATCCCCCCAGATCACACCTATTATCATAACCATGACTTATTCATGCTCTCTCTATTTGCGCAAACATTTGCATGAATAGCTCTAGCCTGATCCCGTAAGTGTGATGCAACTAAATGAGGAAACAAACAAACAAACAAAAACGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7901 lncRNA upstream 880 11253212 ~ 11254044 (+) True G7163
TU7900 lncRNA upstream 1739 11252887 ~ 11253185 (+) True G7162
TU7899 lncRNA upstream 2568 11251605 ~ 11252356 (+) True G7161
TU7898 lncRNA upstream 3331 11251027 ~ 11251593 (+) True G7160
TU7897 lncRNA upstream 4532 11250143 ~ 11250392 (+) True G7159
TU7903 lncRNA downstream 1276 11256525 ~ 11257054 (+) True G7165
TU7904 lncRNA downstream 2347 11257596 ~ 11258660 (+) True G7166
TU7905 lncRNA downstream 3555 11258804 ~ 11259038 (+) True G7167
TU7906 lncRNA downstream 4189 11259438 ~ 11260112 (+) True G7168
TU7907 lncRNA downstream 9498 11264747 ~ 11265439 (+) True G7169
CI01000000_11137352_11139990.mRNA mRNA upstream 114899 11136838 ~ 11140025 (+) True CI01000000_11137352_11139990
CI01000000_11094594_11098001.mRNA mRNA upstream 156701 11092597 ~ 11098223 (+) False CI01000000_11094594_11098001
CI01000000_11075141_11078086.mRNA mRNA upstream 176533 11074854 ~ 11078391 (+) True CI01000000_11075141_11078086
CI01000000_10984317_10995531.mRNA mRNA upstream 259330 10984317 ~ 10995594 (+) True CI01000000_10984317_10995531
CI01000000_10938621_10941220.mRNA mRNA upstream 313326 10938085 ~ 10941598 (+) True CI01000000_10938621_10941220
CI01000000_11272091_11279011.mRNA mRNA downstream 16644 11271893 ~ 11279124 (+) False CI01000000_11272091_11279011
CI01000000_11335685_11340519.mRNA mRNA downstream 79153 11334402 ~ 11340732 (+) True CI01000000_11335685_11340519
CI01000000_11381704_11382225.mRNA mRNA downstream 124628 11379877 ~ 11382288 (+) True CI01000000_11381704_11382225
CI01000000_11479843_11484323.mRNA mRNA downstream 222778 11478027 ~ 11485062 (+) True CI01000000_11479843_11484323
CI01000000_11569924_11573883.mRNA mRNA downstream 314675 11569924 ~ 11574833 (+) True CI01000000_11569924_11573883
TU7890 other upstream 9291 11244457 ~ 11245633 (+) True G7153
TU7753 other upstream 274052 10978489 ~ 10980872 (+) True G7018
TU7538 other upstream 821906 10427223 ~ 10433018 (+) True G6820
TU7529 other upstream 933245 10204831 ~ 10321679 (+) True G6811
TU3177 other upstream 6528442 4725986 ~ 4726482 (+) False G2850
TU8274 other downstream 881273 12136522 ~ 12137008 (+) True G7514
TU8285 other downstream 923120 12178369 ~ 12179008 (+) True G7522
TU10171 other downstream 2972188 14227437 ~ 14234941 (+) True G9201
TU11228 other downstream 4675017 15930266 ~ 15930562 (+) True G10201
TU12413 other downstream 6083905 17339154 ~ 17346200 (+) False CI01000000_17339270_17345013

Expression Profile