RNA id: TU7907



Basic Information


Item Value
RNA id TU7907
length 693
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G7169
representative True

Chromosome Information


Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 11264747 ~ 11265439 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CAGTTACACTGCATGTCAAAGATCAGACCAGTTCATTTACAATGGCCTCAATGCACAAAGGCTTCAAGGACAGGACTGATGCTATCAACAGCTCTAAATTATGGCCCTGTTGCAGTTTGCACATTTGGGCCGAGAGCTCGCAGCAGATTGAGGTCATGAAGTTTAAGCAGCAAGACAGATTTAGAGGTGGACTGTCTCAGTTTGCACAATTCAAATGAGGGGAAGTCAGAAGCAATTTCAATCACTCTCATTTTGCACGAAATGCCAGTTAACCGTCTGTTGGAAACGAACAGAAGAACATCATCATCAGCTGCTCCAGCAGCCCTGGGGGACCATGCGCTTAAAATACCAGCACTTTAAATATCATCTGTATCTGAGTCAAGACTACTTTTTGGTCTCTTGGGATCTTCTTCTGCAGCCTTGAGGAAATGGATTTAATTTTTATTGCTGTGTCATTTTGAAGTTCCTGGAGCTGAGGTGAAATTGAGCTTTTCTTTACACCAGTAAACCTTTTATTCTCTACTTAAAAACCAAATCCATATTTTCCAGAGTTTCAAATGCCTGAGAGAAGTCAACATGCAACTGCAGAGGGAGAAAAGGGCAACTGTGAAAGTAGGAGATCCTTCCAATGATTTGACTGATCTGTAATCTCAATTTAATTAAAGGAACACTCCACTTTTTTTGAAAATAGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU7906 lncRNA upstream 4635 11259438 ~ 11260112 (+) True G7168
TU7905 lncRNA upstream 5709 11258804 ~ 11259038 (+) True G7167
TU7904 lncRNA upstream 6087 11257596 ~ 11258660 (+) True G7166
TU7903 lncRNA upstream 7693 11256525 ~ 11257054 (+) True G7165
TU7902 lncRNA upstream 9498 11254924 ~ 11255249 (+) True G7164
TU7908 lncRNA downstream 1542 11266981 ~ 11267533 (+) True G7170
TU7909 lncRNA downstream 2353 11267792 ~ 11268065 (+) True G7171
TU7910 lncRNA downstream 3014 11268453 ~ 11268683 (+) True G7172
TU7911 lncRNA downstream 5909 11271348 ~ 11271572 (+) True G7173
TU7912 lncRNA downstream 6878 11272317 ~ 11272820 (+) True G7174
CI01000000_11137352_11139990.mRNA mRNA upstream 124722 11136838 ~ 11140025 (+) True CI01000000_11137352_11139990
CI01000000_11094594_11098001.mRNA mRNA upstream 166524 11092597 ~ 11098223 (+) False CI01000000_11094594_11098001
CI01000000_11075141_11078086.mRNA mRNA upstream 186356 11074854 ~ 11078391 (+) True CI01000000_11075141_11078086
CI01000000_10984317_10995531.mRNA mRNA upstream 269153 10984317 ~ 10995594 (+) True CI01000000_10984317_10995531
CI01000000_10938621_10941220.mRNA mRNA upstream 323149 10938085 ~ 10941598 (+) True CI01000000_10938621_10941220
CI01000000_11272091_11279011.mRNA mRNA downstream 6454 11271893 ~ 11279124 (+) False CI01000000_11272091_11279011
CI01000000_11335685_11340519.mRNA mRNA downstream 68963 11334402 ~ 11340732 (+) True CI01000000_11335685_11340519
CI01000000_11381704_11382225.mRNA mRNA downstream 114438 11379877 ~ 11382288 (+) True CI01000000_11381704_11382225
CI01000000_11479843_11484323.mRNA mRNA downstream 212588 11478027 ~ 11485062 (+) True CI01000000_11479843_11484323
CI01000000_11569924_11573883.mRNA mRNA downstream 304485 11569924 ~ 11574833 (+) True CI01000000_11569924_11573883
TU7890 other upstream 19114 11244457 ~ 11245633 (+) True G7153
TU7753 other upstream 283875 10978489 ~ 10980872 (+) True G7018
TU7538 other upstream 831729 10427223 ~ 10433018 (+) True G6820
TU7529 other upstream 943068 10204831 ~ 10321679 (+) True G6811
TU3177 other upstream 6538265 4725986 ~ 4726482 (+) False G2850
TU8274 other downstream 871083 12136522 ~ 12137008 (+) True G7514
TU8285 other downstream 912930 12178369 ~ 12179008 (+) True G7522
TU10171 other downstream 2961998 14227437 ~ 14234941 (+) True G9201
TU11228 other downstream 4664827 15930266 ~ 15930562 (+) True G10201
TU12413 other downstream 6073715 17339154 ~ 17346200 (+) False CI01000000_17339270_17345013

Expression Profile