RNA id: TU9088


Basic Information

Item Value
RNA id TU9088
length 240
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G8251
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 11614726 ~ 11614965 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCTGCCATTCCTCCTGTAGCTATCTGGTTCTCCTTGAAGACATCACCTCTAGGGCTGTGTTTGCTTGTTTGTACCTGTCATGTGGGCCTGCTTGTCCACCCAGCATGCCACTTGGTAACATCTTATCAGTTCCTTAAAGATCAAAGACCCATGGTGATCTTTATCAGCCGATATACCTCCCCTCCTTCTTCACTCGGCCTCCATCAAAGTTCCAAAACTGTGTATACCATGCCTTTAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9007 lncRNA downstream 421551 11192967 ~ 11193175 (-) True G8180
TU8999 lncRNA downstream 438702 11175754 ~ 11176024 (-) True G8172
TU8988 lncRNA downstream 469753 11144751 ~ 11144973 (-) True G8161
TU8982 lncRNA downstream 480029 11134400 ~ 11134697 (-) True G8155
TU8969 lncRNA downstream 515173 11099192 ~ 11099553 (-) True G8142
TU9083 lncRNA upstream 3889 11618854 ~ 11619745 (-) True G8246
TU9090 lncRNA upstream 5136 11620101 ~ 11620367 (-) True G8253
TU9091 lncRNA upstream 5594 11620559 ~ 11620817 (-) True G8254
TU9092 lncRNA upstream 6217 11621182 ~ 11621419 (-) True G8255
TU9080 lncRNA upstream 150991 11765956 ~ 11784772 (-) True G8243
CI01000000_11603826_11605350.mRNA mRNA downstream 9376 11603800 ~ 11605350 (-) True CI01000000_11603826_11605350
CI01000000_11600258_11602519.mRNA mRNA downstream 12146 11599982 ~ 11602580 (-) True CI01000000_11600258_11602519
CI01000000_11587766_11588330.mRNA mRNA downstream 26396 11587316 ~ 11588330 (-) True CI01000000_11587766_11588330
CI01000000_11584045_11586744.mRNA mRNA downstream 27744 11583971 ~ 11586982 (-) True CI01000000_11584045_11586744
CI01000000_11541564_11559682.mRNA mRNA downstream 55044 11541451 ~ 11559682 (-) True CI01000000_11541564_11559682
CI01000000_11644676_11648034.mRNA mRNA upstream 29081 11644046 ~ 11648034 (-) True CI01000000_11644676_11648034
CI01000000_11650257_11652811.mRNA mRNA upstream 34939 11649904 ~ 11654726 (-) True CI01000000_11650257_11652811
CI01000000_11661528_11696310.mRNA mRNA upstream 46048 11661013 ~ 11696310 (-) True CI01000000_11661528_11696310
CI01000000_11721762_11759751.mRNA mRNA upstream 106602 11721567 ~ 11759751 (-) True CI01000000_11721762_11759751
CI01000000_11788953_11800880.mRNA mRNA upstream 173938 11788903 ~ 11801346 (-) True CI01000000_11788953_11800880
TU8948 other downstream 573817 11040269 ~ 11040909 (-) True G8125
TU8770 other downstream 787131 10827450 ~ 10827595 (-) True G7949
TU8769 other downstream 1200213 10404328 ~ 10414513 (-) True G7948
TU4363 other downstream 5211201 6157013 ~ 6403525 (-) False G3931
TU4125 other downstream 5613957 6000407 ~ 6000769 (-) True G3716
TU9592 other upstream 1670359 13285324 ~ 13311429 (-) False G8699
TU9587 other upstream 1689311 13304276 ~ 13311429 (-) True G8699
TU9950 other upstream 2111835 13726800 ~ 13727090 (-) True G9036
TU10603 other upstream 2726037 14341002 ~ 14346534 (-) True G9602
TU10602 other upstream 2770392 14483120 ~ 14498594 (-) True G9601

Expression Profile