RNA id: TCONS_00012861


Basic Information

Item Value
RNA id TCONS_00012861
length 580
RNA type processed_transcript
GC content 0.51
exon number 3
gene id XLOC_006661
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 28276898 ~ 28417158 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTAAAAGTTATTTTGCAAGGATCTGTTACAGTATGTAAAACATTGCATCAGCCGTATACTTAATTGCGAAGCAGAAGGAAGCCTGTGACTTCCGTTTTCCTCTTCAGATCTTTCGCTTTGGATTATATTTCGCTCTGGCTATAGCAGTGGACTCTCGTCAGTCTCCAACACCAACCAGCCCGAGCCAAGGAGCATCTTGCAGAGGGTCTGCATGTGGACCTCTGGAGGGAAAGCAATAGTGTTTAGCTCACACATAATGACCAGTAGCTGGTGGGATGAGTCCATCCATCTCTGTGAAGTGAACAGGTCCCAGCTGGGCCGATGCCTTCAGGATGGAAAGGGGAAGTGAGGCCGGCTTCACCCGTCTCCCCTAAATAAACCAGGCGACAGGATGCACCCGCATTTGAGAGGACAGACACAGCATCCAGCGGCTGCAGGGGAGGAGCGGCTTCCGCTGTCATGGGTGTCAAGTCCACTATTAGAGAGGCGAGTGAATCCACATGGTGCCTGCAGGATGAAATGAGCCTTCCCATGTGCTGCTGGTAGATCAGCTTTACACAATAAATCTGTGTTCCAGTTC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000144971

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013809 lncRNA downstream 460257 27801415 ~ 27816641 (-) True XLOC_006655
TCONS_00013808 lncRNA downstream 460281 27801415 ~ 27816617 (-) False XLOC_006655
TCONS_00013807 lncRNA downstream 460291 27801415 ~ 27816607 (-) False XLOC_006655
TCONS_00013806 lncRNA downstream 999189 27271338 ~ 27277709 (-) True XLOC_006650
TCONS_00013805 lncRNA downstream 1049148 27227361 ~ 27227750 (-) True XLOC_006649
TCONS_00013810 lncRNA upstream 132063 28427477 ~ 28444818 (-) True XLOC_006663
TCONS_00013811 lncRNA upstream 202388 28497802 ~ 28513141 (-) False XLOC_006664
TCONS_00012864 lncRNA upstream 204913 28500327 ~ 28513347 (-) True XLOC_006664
TCONS_00013812 lncRNA upstream 250998 28546412 ~ 28572464 (-) True XLOC_006665
TCONS_00013813 lncRNA upstream 381707 28677121 ~ 28680434 (-) False XLOC_006668
TCONS_00012860 mRNA downstream 4599 28267997 ~ 28272299 (-) True XLOC_006660
TCONS_00012859 mRNA downstream 10979 28264834 ~ 28265919 (-) True XLOC_006659
TCONS_00012856 mRNA downstream 13030 28009727 ~ 28263868 (-) False XLOC_006657
TCONS_00012857 mRNA downstream 13042 28009729 ~ 28263856 (-) True XLOC_006657
TCONS_00012854 mRNA downstream 360333 27900446 ~ 27916565 (-) False XLOC_006656
TCONS_00012863 mRNA upstream 10384 28305798 ~ 28308138 (-) True XLOC_006662
TCONS_00012865 mRNA upstream 305781 28601195 ~ 28610965 (-) True XLOC_006666
TCONS_00012866 mRNA upstream 339448 28634862 ~ 28672474 (-) False XLOC_006667
TCONS_00012868 mRNA upstream 354344 28649758 ~ 28674422 (-) False XLOC_006667
TCONS_00012867 mRNA upstream 354344 28649758 ~ 28674422 (-) True XLOC_006667
TCONS_00012858 other downstream 97348 28179434 ~ 28179550 (-) True XLOC_006658
TCONS_00012853 other downstream 586622 27690160 ~ 27690276 (-) True XLOC_006654
TCONS_00012849 other downstream 613826 27651179 ~ 27663072 (-) False XLOC_006653
TCONS_00012832 other downstream 1709714 26567066 ~ 26567184 (-) True XLOC_006646
TCONS_00012810 other downstream 2728284 25545676 ~ 25548614 (-) False XLOC_006634
TCONS_00012879 other upstream 1211246 29506660 ~ 29507601 (-) False XLOC_006678
TCONS_00012895 other upstream 2336691 30632105 ~ 30632219 (-) True XLOC_006693
TCONS_00012900 other upstream 2369405 30664819 ~ 30700459 (-) False XLOC_006695
TCONS_00012906 other upstream 2559905 30855319 ~ 30872439 (-) True XLOC_006699
TCONS_00012916 other upstream 2780419 31075833 ~ 31075947 (-) True XLOC_006705

Expression Profile

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