RNA id: TCONS_00012862


Basic Information

Item Value
RNA id TCONS_00012862
length 612
RNA type processed_transcript
GC content 0.44
exon number 5
gene id XLOC_006661
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 28276898 ~ 28417158 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCCCTTTGCACTTCCGACCGAGGCGCGCGCCCCTTAACAAGACCAAGCTTGTACAATCACATGACGGGCAGCAACGTGATTTCTGCTGAAATCAATTAGTTAAGTGAATTTACAAAGTCTACGGTCACTAGAATGAAGGCACCACGGAGAATCCTACAGTGATGGAGGAGATGAGCAGTTTCCTAAATTACTGCTTGGGGTTTTTAAGAAGAAAGGAAGCCATGGCATGATGGTTTCTCAATCGGTTTATTTCTTATTCGACCAAGGAAATGACACTTAAAAAGCATAGAATAACTTCAAGTACAGGTTTTTTTGATGAACAGTCTTAAGGAGGAAGAGCAtgagtgaggaggaggaggaagagggtgAAGGTGTGTTTAGCTTGCAGAGCAGACTCTTCCTCTATCATGCATCAGCCGTATACTTAATTGCGAAGCAGAAGGAAGCCTGTGACTTCCGTTTTCCTCTTCAGATCTTTCGCTTTGGATTATATTTCGCTCTGGCTATAGCAGTGGACTCTCGTCAGTCTCCAACACCAACCAGCCCGAGCCAAGGAGCATCTTGCAGAGGGTAATCCATCTCCATCACTTAAATGATTATCCCCATTAATC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000140989

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013809 lncRNA downstream 469221 27801415 ~ 27816641 (-) True XLOC_006655
TCONS_00013808 lncRNA downstream 469245 27801415 ~ 27816617 (-) False XLOC_006655
TCONS_00013807 lncRNA downstream 469255 27801415 ~ 27816607 (-) False XLOC_006655
TCONS_00013806 lncRNA downstream 1008153 27271338 ~ 27277709 (-) True XLOC_006650
TCONS_00013805 lncRNA downstream 1058112 27227361 ~ 27227750 (-) True XLOC_006649
TCONS_00013810 lncRNA upstream 10319 28427477 ~ 28444818 (-) True XLOC_006663
TCONS_00013811 lncRNA upstream 80644 28497802 ~ 28513141 (-) False XLOC_006664
TCONS_00012864 lncRNA upstream 83169 28500327 ~ 28513347 (-) True XLOC_006664
TCONS_00013812 lncRNA upstream 129254 28546412 ~ 28572464 (-) True XLOC_006665
TCONS_00013813 lncRNA upstream 259963 28677121 ~ 28680434 (-) False XLOC_006668
TCONS_00012860 mRNA downstream 13563 28267997 ~ 28272299 (-) True XLOC_006660
TCONS_00012859 mRNA downstream 19943 28264834 ~ 28265919 (-) True XLOC_006659
TCONS_00012856 mRNA downstream 21994 28009727 ~ 28263868 (-) False XLOC_006657
TCONS_00012857 mRNA downstream 22006 28009729 ~ 28263856 (-) True XLOC_006657
TCONS_00012855 mRNA downstream 369423 27901766 ~ 27916439 (-) True XLOC_006656
TCONS_00012865 mRNA upstream 184037 28601195 ~ 28610965 (-) True XLOC_006666
TCONS_00012866 mRNA upstream 217704 28634862 ~ 28672474 (-) False XLOC_006667
TCONS_00012868 mRNA upstream 232600 28649758 ~ 28674422 (-) False XLOC_006667
TCONS_00012867 mRNA upstream 232600 28649758 ~ 28674422 (-) True XLOC_006667
TCONS_00012870 mRNA upstream 265456 28682614 ~ 28689717 (-) False XLOC_006669
TCONS_00012858 other downstream 106312 28179434 ~ 28179550 (-) True XLOC_006658
TCONS_00012853 other downstream 595586 27690160 ~ 27690276 (-) True XLOC_006654
TCONS_00012849 other downstream 622790 27651179 ~ 27663072 (-) False XLOC_006653
TCONS_00012832 other downstream 1718678 26567066 ~ 26567184 (-) True XLOC_006646
TCONS_00012810 other downstream 2737248 25545676 ~ 25548614 (-) False XLOC_006634
TCONS_00012879 other upstream 1089502 29506660 ~ 29507601 (-) False XLOC_006678
TCONS_00012895 other upstream 2214947 30632105 ~ 30632219 (-) True XLOC_006693
TCONS_00012900 other upstream 2247661 30664819 ~ 30700459 (-) False XLOC_006695
TCONS_00012906 other upstream 2438161 30855319 ~ 30872439 (-) True XLOC_006699
TCONS_00012916 other upstream 2658675 31075833 ~ 31075947 (-) True XLOC_006705

Expression Profile

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