RNA id: TCONS_00012868


Basic Information

Item Value
RNA id TCONS_00012868
length 3187
RNA type mRNA
GC content 0.41
exon number 18
gene id XLOC_006667
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 28634862 ~ 28674422 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCACAGATAGCGCAGAGCTGCAGTTGTTGTTGGTCACTGACGGAGGTGAGAATTTTAACGGTTAAAGATGACGACTTCTTGGAGTGATCGGCTTCAGAATTATGCGGATATTCCAGCCAACATGGACGGTTTATCCATGAAGAAGTACAGAAGAGAGGTGCATCACAGAGTTTTTGTCAATAGAAGTTTGGCAATGGAGAAGATAAAATGCTTTGGCTTTGATATGGACTACACTTTGGCAGTGTACAAGTCTCCGGAGTATGAGTCTCTTGGCTTTGATCTGACTGTGGAACGACTTGTTTCCATTGGTTACCCCCAAGAGCTACTAAACTTTGTCTATGACCCTGCTTTTCCCACAAGAGGCTTGGTGTTCGATACAACGTATGGAAACCTGCTGAAAGTAGATGCATATGGAAACATTCTTGTGTGCGCTCATGGTTTCAACTTCTTGCGTGGTCCAGAGATAAGAGAGCTGTACCCAAACAAGTTCATTCAGCGTGGAGATACAGAGCGATTCTACATCCTCAACACACTCTTTAACCTCCCAGaGACATATCTATTTGCCTGCCTGGTGGACTTCTTCACTAGTTGCTCAAGATACACCAGTTGTGAGATGGGCTTTAAAGATGGAGATCTTTTCATGTCTTTTAAGAGCATGTTTCAGGATGTCAGAGATGCTGTGGATTGGGTCCATTTTAAGGGCTCACTAAAGGAGAAAACGGTTGAAAACCTAGAGAAATATGTGGTGAAAGATGCTAAATTACCATTGCTTCTAAGCCGAATGAATGAAGTTGCCAAAGTGTTTCTTGTTACCAACAGTGACTACAAGTACACAGACaaaattatgACATACTTGTTTGATTTTCCACATGGTCCAAAATTGGGTTCTCCTCATCGACCCTGGCAGTCCTACTTTGATCTTATTCTGGTGGACGCCAGGAAGCCAATGTTTTTTGGGGAGGGCACAGTCTTGAGACAAGTGGACACGACCACTGGGAGACTGAAGATTGGGACATATACAGGTCCCTTGCAGCATGGCATAGTATATTCTGGTGGTTCATCAGACATAGTTTGTGATCTGCTGGGAGCAAAAGGAAAGGACATTCTGTACATTGGTGACCACATCTTTGGAGATATCCTGAAGTCTAAGAAGCGTCAGGGTTGGAGAACGTTCCTGGTGATTCCTGAGCTGGCTCAGGAGCTTCACGAACTACAGAGTCTGGATATTTTCCTGGCAGAGCTCTACAAGCATTTGGACAGCAGCAGCAATGAGAGACCTGATATTAGCTCTCTTCAGAGGAGGATCAAGAAAGTGACCCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGCGGCTCTCGCCAGACACTCTTTGCATCTCAAGTGATGCGTTACGCTGACCTGTATGCGGCGTCCTTCATCAATCTCCTATATTACCCATTTAGCTACCTGTTCAGAGCTGCGCACGTCCTGATGCCTCACGAGTCTACTGTGGAGCACACTCATGTGGACATCAATGACACAGAGTCCCCCATGGCCACCCGCAACCGGCACGCCATTGACTTTAGAGAGCACGAGTGCAAGAGACACCAGCTGACCCGCTCCATCAGCGAAATCAACCCTCCACACCTCTTCCCTCAGACGCCTCAGGAGATCACACACTGCCACGATGAGGATGatgacgaggaggaggaggaagaagaggaataAGCACACGACTGCTGATATTACATCTGATATGCATCTACTGTAAACAAGTATGATccctgcattcacacacagccATATATTTTGTAAAGCTGCAAAGAGAGGATGTTTATTTCTTGGGAAATATATTTTAGAGTTCAAAGTTTGATGAGAGGATGAAGCTAAAATGTTTAGCTTCCTATTTTTGAATGAGGTCCACTCAGAAACGACAACAGATCTGTGAATTATTTGCATGATGTTGAGGAAACATTACGAGTTACGAGGTACATAGCTGACTTAAGTAAATAGCATGAATACTTCTTTTTTGGCTCTGTGATGTATGTAGATCGCTTTCAAACTCCAGAGAGGAGCAGTATAGCATGCTGGGAAATGACACCAACAGTACAGCTTGCTTGTTATCCGTTTGACTGCCTGTTCAAGCGATGTAACATCGCCATCTACTTTTCAAAACTAGTAGTAcgtaaatttctgtcattattattattttttttctgaggaaaaATGCAACTTTTTAGGGTACTAGAAAAGGTTTGAGTGTCTTATGCACTCGCCCTGATCACTGTGTTAATATTAGACTGAGAATCTAGAGCTTAGATTTATTGCCTACTATTTTTATATCCACTGACCTACAGTTACTGCAGCTAGATATGTTTAAACACatcctttttgttgttgtttatattaGCATAATGGTTAAGTTTCTGGCAGAGGACTgtcatttaggaaaaaaaaagctGGTCGAAAGAATTGTGGGAACCAGTGGATCGACATCCATTGAACACGCGGTTATTATGAATATTTGTATCTCATTTATACAGTCCTGATTCTGAAATCTTTGTTTTTGGCTGACATGGTGCTGTTTAGCATCAGAAtcttttttgatgtttttgttttaaactgaaGGGAATTTATGATGGGTCTATGTTGGTTTGATATACTGTACTGCTTCATTTTAAACAGTATTTGGACAGAACCCCTGGATTATTTCAATCCGAGTCATTTTGCCAATGTAATATGTGGATTTGTTTATTCAACCAAGGACTGTTATCGCTGTCCCTCTTTTAAATTCACAGATGctgttgatttattgattttgtgtaatgtatttttaaaaatccttttcAATGTTTATTTAGGCTTTTCTAAGTCTGCTGTTGGATATGTGTGATTCatctgtatttttattgttttgaaatCTCTGTATTTTAGTTTGAGCcctgttttaaaaccatttcctTACTGTTTTTCATGAATGTGTTTGGATTTATTTGAGTGTTTGTAGAATTTACAGCCACTGTCATGACAGACTGTTGTGGGAGGATCagattatactgtatttttagtGTAGAATTAAATCAGTCTGCTTTCAAATGTGTTgtcattaaatgtttttgtttggcaTTGTTGAGTTGGTTTTCGGTGCTGTAGGTTGTTGCATATGAAGAGAATAAAGTTTCTGTCATGCA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008253 5'-nucleotidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3566 Predicted to enable 5'-nucleotidase activity. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 45. Orthologous to human NT5C2 (5'-nucleotidase, cytosolic II).

Ensembl:

ensembl_id ENSDART00000122754

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013812 lncRNA downstream 77294 28546412 ~ 28572464 (-) True XLOC_006665
TCONS_00012864 lncRNA downstream 136411 28500327 ~ 28513347 (-) True XLOC_006664
TCONS_00013811 lncRNA downstream 136617 28497802 ~ 28513141 (-) False XLOC_006664
TCONS_00013810 lncRNA downstream 204940 28427477 ~ 28444818 (-) True XLOC_006663
TCONS_00013809 lncRNA downstream 833117 27801415 ~ 27816641 (-) True XLOC_006655
TCONS_00013813 lncRNA upstream 2699 28677121 ~ 28680434 (-) False XLOC_006668
TCONS_00012869 lncRNA upstream 2699 28677121 ~ 28719230 (-) True XLOC_006668
TCONS_00013814 lncRNA upstream 69376 28743798 ~ 28746577 (-) True XLOC_006670
TCONS_00013815 lncRNA upstream 152871 28827293 ~ 28848301 (-) False XLOC_006671
TCONS_00013816 lncRNA upstream 152871 28827293 ~ 28849894 (-) True XLOC_006671
TCONS_00012865 mRNA downstream 38793 28601195 ~ 28610965 (-) True XLOC_006666
TCONS_00012863 mRNA downstream 341620 28305798 ~ 28308138 (-) True XLOC_006662
TCONS_00012860 mRNA downstream 377459 28267997 ~ 28272299 (-) True XLOC_006660
TCONS_00012859 mRNA downstream 383839 28264834 ~ 28265919 (-) True XLOC_006659
TCONS_00012857 mRNA downstream 385902 28009729 ~ 28263856 (-) True XLOC_006657
TCONS_00012870 mRNA upstream 8192 28682614 ~ 28689717 (-) False XLOC_006669
TCONS_00012871 mRNA upstream 12975 28687397 ~ 28688104 (-) True XLOC_006669
TCONS_00012872 mRNA upstream 729796 29404218 ~ 29406534 (-) True XLOC_006673
TCONS_00012873 mRNA upstream 732392 29406814 ~ 29420885 (-) False XLOC_006674
TCONS_00012874 mRNA upstream 734937 29409359 ~ 29421331 (-) True XLOC_006674
TCONS_00012862 other downstream 232600 28285862 ~ 28417158 (-) True XLOC_006661
TCONS_00012861 other downstream 354344 28276898 ~ 28295414 (-) False XLOC_006661
TCONS_00012858 other downstream 470208 28179434 ~ 28179550 (-) True XLOC_006658
TCONS_00012853 other downstream 959482 27690160 ~ 27690276 (-) True XLOC_006654
TCONS_00012849 other downstream 986686 27651179 ~ 27663072 (-) False XLOC_006653
TCONS_00012879 other upstream 832238 29506660 ~ 29507601 (-) False XLOC_006678
TCONS_00012895 other upstream 1957683 30632105 ~ 30632219 (-) True XLOC_006693
TCONS_00012900 other upstream 1990397 30664819 ~ 30700459 (-) False XLOC_006695
TCONS_00012906 other upstream 2180897 30855319 ~ 30872439 (-) True XLOC_006699
TCONS_00012916 other upstream 2401411 31075833 ~ 31075947 (-) True XLOC_006705

Expression Profile

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