RNA id: TCONS_00012869


Basic Information

Item Value
RNA id TCONS_00012869
length 1026
lncRNA type read_through
GC content 0.35
exon number 4
gene id XLOC_006668
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 28677121 ~ 28719230 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cttaaagggactttggtaataATTGTATGGTTGCTTACTTTTCCGACTTCAGAAAaagattcattcactcattcattttggAACAACGTCACTACGTTACCGCTATTTGTTGTTGGCTTCGATTGGAAATAATTTCGAAGGAGGGACAAACAAAAGACCCAAGAAGCTGAGGTTCTGGACTGGAGATCCACTTTTAGCACCCCTTTGATCTCAGCAAGACCCCGGTGAGAAAACTCCTGGAAAGTCCATTTCTGTTGCTTCAAGCTCTGTAAGAAACTTCTGGCACTTAGACATGAGGACATTAATGGCCTCAGTAACCAGGACATCGGGAGGGAGGATCCCTGTGGACTCAACTGAAACTGAAGAGAAAACAGAGGCAACATGCGATTATACCATTGGTTTCTGCCACCAAGTGAACATGACCTTGCATAAACCTCTCTTGCAAAATCCTCTTTATGAAGAGACCGTTCTTAGTGGCATTAACCTCGGCCACCTCTCTGCGATTagttcagcaccatggacagaaCTCCCGGCTTGTTGACAGGGCAGTTCAAGCAGACTCATCCACGACCTGTGCTGTAATTCATGCTTAAGTATTTTTAACATCTTTACAGTTCTGCTATAATTATCAGACTTACATTTTTCATGAGCTACAATAGcatgattacattaaatatttagatattttagcTCATCTCTGTCACATgactagatcatttgaatcaactAATAAAGTAAGAAAAggttattaattattatctttaattAGTTATGATTATAATTATACAGTCACAGCATCTAAAGCATGCTCTTTCCCTAATGCATTtatataaattaacataaaatcttAACATTGTGTTAAAaccaatgtaaaacaattaaatgattaatagacatgttttgtatttgtattttgctaataataatgatgatggttaTTATTACTGAATTAAATGTTCTCTTTTTATTAATCAATGGTTAAAaagaaaagtgaaataaaaagtaacatctgtattattaaaaata

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013812 lncRNA downstream 104657 28546412 ~ 28572464 (-) True XLOC_006665
TCONS_00012864 lncRNA downstream 163774 28500327 ~ 28513347 (-) True XLOC_006664
TCONS_00013811 lncRNA downstream 163980 28497802 ~ 28513141 (-) False XLOC_006664
TCONS_00013810 lncRNA downstream 232303 28427477 ~ 28444818 (-) True XLOC_006663
TCONS_00013809 lncRNA downstream 860480 27801415 ~ 27816641 (-) True XLOC_006655
TCONS_00013814 lncRNA upstream 24568 28743798 ~ 28746577 (-) True XLOC_006670
TCONS_00013815 lncRNA upstream 108063 28827293 ~ 28848301 (-) False XLOC_006671
TCONS_00013816 lncRNA upstream 108063 28827293 ~ 28849894 (-) True XLOC_006671
TCONS_00013817 lncRNA upstream 505762 29224992 ~ 29229935 (-) True XLOC_006672
TCONS_00013484 lncRNA upstream 703464 29422694 ~ 29424139 (-) True XLOC_006675
TCONS_00012868 mRNA downstream 2699 28649758 ~ 28674422 (-) False XLOC_006667
TCONS_00012867 mRNA downstream 2699 28649758 ~ 28674422 (-) True XLOC_006667
TCONS_00012866 mRNA downstream 4647 28634862 ~ 28672474 (-) False XLOC_006667
TCONS_00012865 mRNA downstream 66156 28601195 ~ 28610965 (-) True XLOC_006666
TCONS_00012863 mRNA downstream 368983 28305798 ~ 28308138 (-) True XLOC_006662
TCONS_00012872 mRNA upstream 684988 29404218 ~ 29406534 (-) True XLOC_006673
TCONS_00012873 mRNA upstream 687584 29406814 ~ 29420885 (-) False XLOC_006674
TCONS_00012874 mRNA upstream 690129 29409359 ~ 29421331 (-) True XLOC_006674
TCONS_00012875 mRNA upstream 702819 29422049 ~ 29424454 (-) False XLOC_006675
TCONS_00012876 mRNA upstream 726996 29446226 ~ 29455859 (-) True XLOC_006676
TCONS_00012862 other downstream 259963 28285862 ~ 28417158 (-) True XLOC_006661
TCONS_00012861 other downstream 381707 28276898 ~ 28295414 (-) False XLOC_006661
TCONS_00012858 other downstream 497571 28179434 ~ 28179550 (-) True XLOC_006658
TCONS_00012853 other downstream 986845 27690160 ~ 27690276 (-) True XLOC_006654
TCONS_00012849 other downstream 1014049 27651179 ~ 27663072 (-) False XLOC_006653
TCONS_00012879 other upstream 787430 29506660 ~ 29507601 (-) False XLOC_006678
TCONS_00012895 other upstream 1912875 30632105 ~ 30632219 (-) True XLOC_006693
TCONS_00012900 other upstream 1945589 30664819 ~ 30700459 (-) False XLOC_006695
TCONS_00012906 other upstream 2136089 30855319 ~ 30872439 (-) True XLOC_006699
TCONS_00012916 other upstream 2356603 31075833 ~ 31075947 (-) True XLOC_006705

Expression Profile

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