RNA id: TU9824


Basic Information

Item Value
RNA id TU9824
length 254
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G8920
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 13968497 ~ 13968881 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTACACTGTAAAAAATGAATGTGATTTTAACAGTAAAATATTGTAAAAACGCTACGGAAAAAAATTGTAAATAGGTTAACAGTAAGTTCCAGTACTATATACAGGGAAAAACTGTAAAAGCTCTTACCAGACATTTTATGTAATTTTCACAGTAAAATGCTGTAAATTTTACAATTTTTAGAAGTAAAAAAGAACAAATCAATGTATAATTTACAGTCAAAAATGAATGTTTATTGCATTATGTAAGTGTTGTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9822 lncRNA upstream 2722 13965446 ~ 13965775 (+) True G8918
TU9816 lncRNA upstream 25801 13942384 ~ 13942696 (+) True G8912
TU9813 lncRNA upstream 44186 13924088 ~ 13924311 (+) True G8909
TU9810 lncRNA upstream 51792 13916367 ~ 13916705 (+) True G8906
TU9809 lncRNA upstream 52273 13915859 ~ 13916224 (+) True G8905
TU10090 lncRNA downstream 113211 14082092 ~ 14082518 (+) True G9159
TU10131 lncRNA downstream 136258 14105139 ~ 14108116 (+) False G9168
TU10133 lncRNA downstream 136258 14105139 ~ 14106441 (+) True G9168
TU10116 lncRNA downstream 155401 14124282 ~ 14124580 (+) True G9167
TU10164 lncRNA downstream 242407 14211288 ~ 14212651 (+) True G9195
CI01000000_13934872_13936612.mRNA mRNA upstream 31550 13934872 ~ 13936947 (+) True CI01000000_13934872_13936612
CI01000000_13926605_13928231.mRNA mRNA upstream 40156 13926519 ~ 13928341 (+) True CI01000000_13926605_13928231
CI01000000_13923608_13925296.mRNA mRNA upstream 42917 13923608 ~ 13925580 (+) True CI01000000_13923608_13925296
CI01000000_13917448_13919323.mRNA mRNA upstream 48653 13917318 ~ 13919844 (+) True CI01000000_13917448_13919323
CI01000000_13849975_13855802.mRNA mRNA upstream 112250 13849975 ~ 13856247 (+) True CI01000000_13849975_13855802
CI01000000_13971301_14008905.mRNA mRNA downstream 1506 13970387 ~ 14010358 (+) True CI01000000_13971301_14008905
CI01000000_14018908_14032529.mRNA mRNA downstream 50027 14018908 ~ 14032529 (+) True CI01000000_14018908_14032529
CI01000000_14143399_14175045.mRNA mRNA downstream 174518 14143399 ~ 14175354 (+) False CI01000000_14143399_14175045
CI01000000_14178546_14189186.mRNA mRNA downstream 209482 14178363 ~ 14189331 (+) True CI01000000_14178546_14189186
CI01000000_14718151_14741998.mRNA mRNA downstream 748924 14717805 ~ 14742191 (+) True CI01000000_14718151_14741998
TU8285 other upstream 1789489 12178369 ~ 12179008 (+) True G7522
TU8274 other upstream 1831489 12136522 ~ 12137008 (+) True G7514
TU7890 other upstream 2722864 11244457 ~ 11245633 (+) True G7153
TU7753 other upstream 2987625 10978489 ~ 10980872 (+) True G7018
TU7538 other upstream 3535479 10427223 ~ 10433018 (+) True G6820
TU10171 other downstream 258556 14227437 ~ 14234941 (+) True G9201
TU11228 other downstream 1961385 15930266 ~ 15930562 (+) True G10201
TU12413 other downstream 3370273 17339154 ~ 17346200 (+) False CI01000000_17339270_17345013
TU12414 other downstream 3370273 17339154 ~ 17346177 (+) True CI01000000_17339270_17345013
TU12656 other downstream 3915072 17883953 ~ 17887462 (+) False G11465

Expression Profile