RNA id: TU10170



Basic Information


Item Value
RNA id TU10170
length 849
lncRNA type antisense_over
GC content 0.32
exon number 4
gene id G9201
representative False

Chromosome Information


Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 14215024 ~ 14234941 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGGCCGTAGACACGCTGACCGTATGCATCGGTCTTGTCCCAGATAAAAGTGTAGGCGAGGTTAGGTGAGGCATGGAACCACTTTTGGAAAAGGTGGCCCTCCACCGCAACCATCAGATGGACTTTGACTAGGCTGAGGGGCACCACGGCTTGAGTCATGGTGATCTTGAGCAAGGAGCGGTAACCTGAGGTCCGGGAACTCAGGTGACAGAGCTTCAGGCTGGTGCCAGGAATCTCTAGCTGCTCATGGAGAACCTGTGTCTCTGGAATGACGGACCTCTCTCCTGGCCTGGAACTGAAGAAAGAGGAAAGGGGGGAGGCCACCACCACAGGATCAGGCCTCACAAATCCACTGAGGTCACAGCTTGGGATGGTGTTCTCTTCTGTCTTCAACATCAGAGTGTCCATGGCATAGAAAATGTTCCAAGGGAGCCACACTGTGCGCTCTTGACTCAGAAACGGTGCTCGCTCAAAGCGTAGGGTGAGAGAGGCTCCACCATTGGCAATGAGGTCAAATGTTCCATCCTGGCGTGTGAGGGTGTAGCCATACTGGGGGTACTTCACAAATGACACATTAACTCCCACCAGCGGGGTTCCATCTGTAGTCACCACCTGACCTCTGATCAGTGATGCCAGACTTGCGTTAAAGGGATTGTCTGCAGGGATTATATGTGTGCTGTCCCGGCCCACTAGCATCTTGACACGGTCATAGAAGGAACGGACTTTTTGCTCAGGGTGCTGGCCTTGCTGGATGACCTGTAAGGGATCCCTAGACCCTCTACAAAGTGGACTGTTTTGGCAGGGACTTTGGATACAGCAGTCTGGATCCATACAGTCAGTCAGACCATCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU10164 lncRNA upstream 2373 14211288 ~ 14212651 (+) True G9195
TU10116 lncRNA upstream 66349 14124282 ~ 14124580 (+) True G9167
TU10131 lncRNA upstream 106908 14105139 ~ 14108116 (+) False G9168
TU10133 lncRNA upstream 108583 14105139 ~ 14106441 (+) True G9168
TU10090 lncRNA upstream 132506 14082092 ~ 14082518 (+) True G9159
TU10202 lncRNA downstream 42840 14260211 ~ 14275525 (+) False G9226
TU10203 lncRNA downstream 57866 14275237 ~ 14322271 (+) True G9226
TU10243 lncRNA downstream 134694 14352065 ~ 14352284 (+) True G9265
TU10244 lncRNA downstream 135157 14352528 ~ 14352807 (+) True G9266
TU10245 lncRNA downstream 136000 14353371 ~ 14353587 (+) True G9267
CI01000000_14178546_14189186.mRNA mRNA upstream 25693 14178363 ~ 14189331 (+) True CI01000000_14178546_14189186
CI01000000_14143399_14175045.mRNA mRNA upstream 39670 14143399 ~ 14175354 (+) False CI01000000_14143399_14175045
CI01000000_14018908_14032529.mRNA mRNA upstream 182495 14018908 ~ 14032529 (+) True CI01000000_14018908_14032529
CI01000000_13971301_14008905.mRNA mRNA upstream 204666 13970387 ~ 14010358 (+) True CI01000000_13971301_14008905
CI01000000_13934872_13936612.mRNA mRNA upstream 278077 13934872 ~ 13936947 (+) True CI01000000_13934872_13936612
CI01000000_14718151_14741998.mRNA mRNA downstream 500434 14717805 ~ 14742191 (+) True CI01000000_14718151_14741998
CI01000000_14801105_14802738.mRNA mRNA downstream 583503 14800874 ~ 14802774 (+) True CI01000000_14801105_14802738
CI01000000_14837947_14838141.mRNA mRNA downstream 620531 14837902 ~ 14838322 (+) True CI01000000_14837947_14838141
CI01000000_14857956_14858702.mRNA mRNA downstream 640585 14857956 ~ 14858783 (+) True CI01000000_14857956_14858702
CI01000000_14882756_14886030.mRNA mRNA downstream 665385 14882756 ~ 14886132 (+) True CI01000000_14882756_14886030
TU8285 other upstream 2036016 12178369 ~ 12179008 (+) True G7522
TU8274 other upstream 2078016 12136522 ~ 12137008 (+) True G7514
TU7890 other upstream 2969391 11244457 ~ 11245633 (+) True G7153
TU7753 other upstream 3234152 10978489 ~ 10980872 (+) True G7018
TU7538 other upstream 3782006 10427223 ~ 10433018 (+) True G6820
TU10171 other downstream 10066 14227437 ~ 14234941 (+) True G9201
TU11228 other downstream 1712895 15930266 ~ 15930562 (+) True G10201
TU12413 other downstream 3121783 17339154 ~ 17346200 (+) False CI01000000_17339270_17345013
TU12414 other downstream 3121783 17339154 ~ 17346177 (+) True CI01000000_17339270_17345013
TU12656 other downstream 3666582 17883953 ~ 17887462 (+) False G11465

Expression Profile