Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU10373 |
| length | 860 |
| lncRNA type | read_through |
| GC content | 0.31 |
| exon number | 3 |
| gene id | G9390 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000000 |
| NCBI id | null |
| chromosome length | 19091038 |
| location | 14775956 ~ 14841692 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU10365 | lncRNA | upstream | 22089 | 14753623 ~ 14753867 (+) | True | G9385 |
| TU10359 | lncRNA | upstream | 38669 | 14736875 ~ 14737287 (+) | True | G9381 |
| TU10353 | lncRNA | upstream | 61983 | 14709741 ~ 14713973 (+) | True | G9375 |
| TU10343 | lncRNA | upstream | 119709 | 14655890 ~ 14656247 (+) | True | G9365 |
| TU10333 | lncRNA | upstream | 178663 | 14597094 ~ 14597293 (+) | True | G9355 |
| TU10392 | lncRNA | downstream | 7442 | 14849134 ~ 14849380 (+) | True | G9404 |
| TU10454 | lncRNA | downstream | 124707 | 14966399 ~ 14969396 (+) | True | G9466 |
| TU10488 | lncRNA | downstream | 317625 | 15159317 ~ 15174070 (+) | True | G9491 |
| TU11020 | lncRNA | downstream | 523376 | 15365068 ~ 15365385 (+) | True | G10004 |
| TU11025 | lncRNA | downstream | 545902 | 15387594 ~ 15387826 (+) | True | G10009 |
| CI01000000_14718151_14741998.mRNA | mRNA | upstream | 33765 | 14717805 ~ 14742191 (+) | True | CI01000000_14718151_14741998 |
| CI01000000_14178546_14189186.mRNA | mRNA | upstream | 586625 | 14178363 ~ 14189331 (+) | True | CI01000000_14178546_14189186 |
| CI01000000_14143399_14175045.mRNA | mRNA | upstream | 600602 | 14143399 ~ 14175354 (+) | False | CI01000000_14143399_14175045 |
| CI01000000_14018908_14032529.mRNA | mRNA | upstream | 743427 | 14018908 ~ 14032529 (+) | True | CI01000000_14018908_14032529 |
| CI01000000_13971301_14008905.mRNA | mRNA | upstream | 765598 | 13970387 ~ 14010358 (+) | True | CI01000000_13971301_14008905 |
| CI01000000_14857956_14858702.mRNA | mRNA | downstream | 16264 | 14857956 ~ 14858783 (+) | True | CI01000000_14857956_14858702 |
| CI01000000_14882756_14886030.mRNA | mRNA | downstream | 41064 | 14882756 ~ 14886132 (+) | True | CI01000000_14882756_14886030 |
| CI01000000_15091223_15092317.mRNA | mRNA | downstream | 249317 | 15091009 ~ 15092571 (+) | True | CI01000000_15091223_15092317 |
| CI01000000_15120586_15123050.mRNA | mRNA | downstream | 278692 | 15120384 ~ 15123648 (+) | True | CI01000000_15120586_15123050 |
| CI01000000_15158265_15165627.mRNA | mRNA | downstream | 315330 | 15157022 ~ 15166272 (+) | False | CI01000000_15158265_15165627 |
| TU10171 | other | upstream | 541015 | 14227437 ~ 14234941 (+) | True | G9201 |
| TU8285 | other | upstream | 2596948 | 12178369 ~ 12179008 (+) | True | G7522 |
| TU8274 | other | upstream | 2638948 | 12136522 ~ 12137008 (+) | True | G7514 |
| TU7890 | other | upstream | 3530323 | 11244457 ~ 11245633 (+) | True | G7153 |
| TU7753 | other | upstream | 3795084 | 10978489 ~ 10980872 (+) | True | G7018 |
| TU11228 | other | downstream | 1088574 | 15930266 ~ 15930562 (+) | True | G10201 |
| TU12413 | other | downstream | 2497462 | 17339154 ~ 17346200 (+) | False | CI01000000_17339270_17345013 |
| TU12414 | other | downstream | 2497462 | 17339154 ~ 17346177 (+) | True | CI01000000_17339270_17345013 |
| TU12656 | other | downstream | 3042261 | 17883953 ~ 17887462 (+) | False | G11465 |
| TU12729 | other | downstream | 3191047 | 18032739 ~ 18164112 (+) | True | G11521 |
