RNA id: TU11025


Basic Information

Item Value
RNA id TU11025
length 233
lncRNA type intronic
GC content 0.35
exon number 1
gene id G10009
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 15387594 ~ 15387826 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTAGGTGTTAGGGTCCGGGTTAGTAGAATAAGTTGACATATAGTTGCAAAGTTACTTCTAGTCAGTAGAATGCCTGTTGGTGCACCATCAAAATAAAGTGTTGGCAGACAGTCTACTAATACTTTAATGAGAGTTAGTTGACATGTAGTTGCAAAGTAGTTAGTAGAATGTATAAAGTGGACCATCGAAATAAAGTGTAACCGAAAGTTCAAAAGAACTGCATTTATTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11020 lncRNA upstream 22209 15365068 ~ 15365385 (+) True G10004
TU10488 lncRNA upstream 213524 15159317 ~ 15174070 (+) True G9491
TU10454 lncRNA upstream 418198 14966399 ~ 14969396 (+) True G9466
TU10392 lncRNA upstream 538214 14849134 ~ 14849380 (+) True G9404
TU10394 lncRNA upstream 547305 14828091 ~ 14840289 (+) True G9406
TU11026 lncRNA downstream 1907 15389733 ~ 15389999 (+) True G10010
TU11027 lncRNA downstream 2192 15390018 ~ 15390529 (+) True G10011
TU11042 lncRNA downstream 28647 15416473 ~ 15418308 (+) True G10026
TU11058 lncRNA downstream 53514 15441340 ~ 15441694 (+) True G10042
TU11087 lncRNA downstream 85099 15472925 ~ 15473208 (+) True G10062
CI01000000_15158265_15165627.mRNA mRNA upstream 221322 15157022 ~ 15166272 (+) False CI01000000_15158265_15165627
CI01000000_15120586_15123050.mRNA mRNA upstream 263946 15120384 ~ 15123648 (+) True CI01000000_15120586_15123050
CI01000000_15091223_15092317.mRNA mRNA upstream 295023 15091009 ~ 15092571 (+) True CI01000000_15091223_15092317
CI01000000_14882756_14886030.mRNA mRNA upstream 501462 14882756 ~ 14886132 (+) True CI01000000_14882756_14886030
CI01000000_14857956_14858702.mRNA mRNA upstream 528811 14857956 ~ 14858783 (+) True CI01000000_14857956_14858702
CI01000000_15519933_15528742.mRNA mRNA downstream 132107 15519933 ~ 15528895 (+) True CI01000000_15519933_15528742
CI01000000_15620007_15622711.mRNA mRNA downstream 232181 15620007 ~ 15622842 (+) True CI01000000_15620007_15622711
CI01000000_15684820_15696865.mRNA mRNA downstream 296669 15684495 ~ 15697115 (+) True CI01000000_15684820_15696865
CI01000000_15893372_15894283.mRNA mRNA downstream 503853 15891679 ~ 15894893 (+) True CI01000000_15893372_15894283
CI01000000_15964514_15964804.mRNA mRNA downstream 576501 15964327 ~ 15964961 (+) True CI01000000_15964514_15964804
TU10171 other upstream 1152653 14227437 ~ 14234941 (+) True G9201
TU8285 other upstream 3208586 12178369 ~ 12179008 (+) True G7522
TU8274 other upstream 3250586 12136522 ~ 12137008 (+) True G7514
TU7890 other upstream 4141961 11244457 ~ 11245633 (+) True G7153
TU7753 other upstream 4406722 10978489 ~ 10980872 (+) True G7018
TU11228 other downstream 542440 15930266 ~ 15930562 (+) True G10201
TU12413 other downstream 1951328 17339154 ~ 17346200 (+) False CI01000000_17339270_17345013
TU12414 other downstream 1951328 17339154 ~ 17346177 (+) True CI01000000_17339270_17345013
TU12656 other downstream 2496127 17883953 ~ 17887462 (+) False G11465
TU12729 other downstream 2644913 18032739 ~ 18164112 (+) True G11521

Expression Profile