RNA id: TU11176


Basic Information

Item Value
RNA id TU11176
length 344
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G10149
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 15776574 ~ 15776917 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAGTGTACACTGTAAACCCAAACTCTCAAAATACTCAATTGGTTTGAGTAGGACAAACTTAAATTGAACAAATTAGTTCAGTTAAATTAACTGTTATGAGTATTTACAATTTTCTTTTTCTTTTGAGTTCACAGCACTGACATATTTTAAGTAAACTGAACTGTTTAATTGTTTTGAGTTGTATGAACTCATTTCTTTTAACTTAGGCTAACTTAAGTTTAACTGAAACTGGGCTGGGATTTCTATTTCCCAGTATGCTTTGCCCATGGCACTGGAAAGGGAGAGTCAATGCTAAAATTAAGTGTTATATAATGTTTTTTGTGCAAGATTAATGGTGAGGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11144 lncRNA upstream 31909 15744388 ~ 15744665 (+) True G10117
TU11129 lncRNA upstream 59546 15716617 ~ 15717028 (+) True G10102
TU11087 lncRNA upstream 303366 15472925 ~ 15473208 (+) True G10062
TU11058 lncRNA upstream 334880 15441340 ~ 15441694 (+) True G10042
TU11042 lncRNA upstream 358266 15416473 ~ 15418308 (+) True G10026
TU11180 lncRNA downstream 2996 15779913 ~ 15780135 (+) True G10153
TU11105 lncRNA downstream 6321 15783238 ~ 15783518 (+) True G10080
TU11072 lncRNA downstream 95484 15872401 ~ 15878873 (+) False G10052
TU11074 lncRNA downstream 95484 15872401 ~ 15880780 (+) False G10052
TU11070 lncRNA downstream 99008 15875925 ~ 15876810 (+) False G10052
CI01000000_15684820_15696865.mRNA mRNA upstream 79459 15684495 ~ 15697115 (+) True CI01000000_15684820_15696865
CI01000000_15620007_15622711.mRNA mRNA upstream 153732 15620007 ~ 15622842 (+) True CI01000000_15620007_15622711
CI01000000_15519933_15528742.mRNA mRNA upstream 247679 15519933 ~ 15528895 (+) True CI01000000_15519933_15528742
CI01000000_15158265_15165627.mRNA mRNA upstream 610302 15157022 ~ 15166272 (+) False CI01000000_15158265_15165627
CI01000000_15120586_15123050.mRNA mRNA upstream 652926 15120384 ~ 15123648 (+) True CI01000000_15120586_15123050
CI01000000_15893372_15894283.mRNA mRNA downstream 114762 15891679 ~ 15894893 (+) True CI01000000_15893372_15894283
CI01000000_15964514_15964804.mRNA mRNA downstream 187410 15964327 ~ 15964961 (+) True CI01000000_15964514_15964804
CI01000000_16011590_16014992.mRNA mRNA downstream 234673 16011590 ~ 16015151 (+) True CI01000000_16011590_16014992
CI01000000_16034357_16056363.mRNA mRNA downstream 256981 16033898 ~ 16056594 (+) True CI01000000_16034357_16056363
CI01000000_16066787_16081915.mRNA mRNA downstream 289392 16066309 ~ 16082483 (+) True CI01000000_16066787_16081915
TU10171 other upstream 1541633 14227437 ~ 14234941 (+) True G9201
TU8285 other upstream 3597566 12178369 ~ 12179008 (+) True G7522
TU8274 other upstream 3639566 12136522 ~ 12137008 (+) True G7514
TU7890 other upstream 4530941 11244457 ~ 11245633 (+) True G7153
TU7753 other upstream 4795702 10978489 ~ 10980872 (+) True G7018
TU11228 other downstream 153349 15930266 ~ 15930562 (+) True G10201
TU12413 other downstream 1562237 17339154 ~ 17346200 (+) False CI01000000_17339270_17345013
TU12414 other downstream 1562237 17339154 ~ 17346177 (+) True CI01000000_17339270_17345013
TU12656 other downstream 2107036 17883953 ~ 17887462 (+) False G11465
TU12729 other downstream 2255822 18032739 ~ 18164112 (+) True G11521

Expression Profile