RNA id: TU11212


Basic Information

Item Value
RNA id TU11212
length 393
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G10185
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 15932984 ~ 15933376 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGAACAGATTTATTTTGTTATGAGACTTTATAGAACTGTACATGCCTTTAATAAATGCCTGTAAAGAGAAGTGAAAATGCTGTTGATTGTCAGGTCATCATGTGCTGTATCTATACTGCCCTCTACTGTTCCAGTCATTATCCTTCTGATAATGTTCCTTCACTGTCTCCAAACACTGAGAAATATTTGAAAATTATTCAAATAGCCTATATAAATAAATTAATAAATATAATAAACTGTATACATAGAAAAAGATATGGTCAAAGTCCCAGGAGAACTGAAATGCATCAATACAGTAGTCATTTAATCAGTCTGCAGTCCAGGAATATTAGAGGATTAGTTCACTTTCAAATGAAAATACTTTACTCACCCTCAAGCCATCCTAGTTGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11230 lncRNA upstream 1517 15931260 ~ 15931467 (+) True G10203
TU11227 lncRNA upstream 3020 15929668 ~ 15929964 (+) True G10200
TU11071 lncRNA upstream 51462 15875925 ~ 15881522 (+) True G10052
TU11074 lncRNA upstream 52204 15872401 ~ 15880780 (+) False G10052
TU11072 lncRNA upstream 54111 15872401 ~ 15878873 (+) False G10052
TU11240 lncRNA downstream 20423 15953799 ~ 15954449 (+) True G10209
TU11276 lncRNA downstream 67476 16000852 ~ 16001649 (+) True G10240
TU11295 lncRNA downstream 80465 16013841 ~ 16014082 (+) True G10255
TU11336 lncRNA downstream 252519 16185895 ~ 16186172 (+) True G10293
TU11337 lncRNA downstream 252894 16186270 ~ 16186508 (+) True G10294
CI01000000_15893372_15894283.mRNA mRNA upstream 38091 15891679 ~ 15894893 (+) True CI01000000_15893372_15894283
CI01000000_15684820_15696865.mRNA mRNA upstream 235869 15684495 ~ 15697115 (+) True CI01000000_15684820_15696865
CI01000000_15620007_15622711.mRNA mRNA upstream 310142 15620007 ~ 15622842 (+) True CI01000000_15620007_15622711
CI01000000_15519933_15528742.mRNA mRNA upstream 404089 15519933 ~ 15528895 (+) True CI01000000_15519933_15528742
CI01000000_15158265_15165627.mRNA mRNA upstream 766712 15157022 ~ 15166272 (+) False CI01000000_15158265_15165627
CI01000000_15964514_15964804.mRNA mRNA downstream 30951 15964327 ~ 15964961 (+) True CI01000000_15964514_15964804
CI01000000_16011590_16014992.mRNA mRNA downstream 78214 16011590 ~ 16015151 (+) True CI01000000_16011590_16014992
CI01000000_16034357_16056363.mRNA mRNA downstream 100522 16033898 ~ 16056594 (+) True CI01000000_16034357_16056363
CI01000000_16066787_16081915.mRNA mRNA downstream 132933 16066309 ~ 16082483 (+) True CI01000000_16066787_16081915
CI01000000_16087757_16091758.mRNA mRNA downstream 154057 16087433 ~ 16092035 (+) True CI01000000_16087757_16091758
TU11228 other upstream 2422 15930266 ~ 15930562 (+) True G10201
TU10171 other upstream 1698043 14227437 ~ 14234941 (+) True G9201
TU8285 other upstream 3753976 12178369 ~ 12179008 (+) True G7522
TU8274 other upstream 3795976 12136522 ~ 12137008 (+) True G7514
TU7890 other upstream 4687351 11244457 ~ 11245633 (+) True G7153
TU12413 other downstream 1405778 17339154 ~ 17346200 (+) False CI01000000_17339270_17345013
TU12414 other downstream 1405778 17339154 ~ 17346177 (+) True CI01000000_17339270_17345013
TU12656 other downstream 1950577 17883953 ~ 17887462 (+) False G11465
TU12729 other downstream 2099363 18032739 ~ 18164112 (+) True G11521
TU13048 other downstream 2747491 18680867 ~ 18710278 (+) False G11801

Expression Profile