RNA id: TU11295


Basic Information

Item Value
RNA id TU11295
length 200
lncRNA type intronic
GC content 0.29
exon number 2
gene id G10255
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 16013841 ~ 16014082 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCATCTCCAGTCTTCAGTGTCACATGATCAAGGAACATTTCTCATTATTATCAATGTTGAAAACAGTTGTGCTGCTCAATGTTTTTGTGGAAACACTGATACACTTTTTTTTCAGGATTCTTTAAAGAATAGAAAATTCAAAAGAACATTATTTTAAATGGAAATATTTTGTAACATTATCACTATCATTCAAAAGTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11276 lncRNA upstream 12192 16000852 ~ 16001649 (+) True G10240
TU11240 lncRNA upstream 59392 15953799 ~ 15954449 (+) True G10209
TU11212 lncRNA upstream 80465 15932984 ~ 15933376 (+) True G10185
TU11230 lncRNA upstream 82374 15931260 ~ 15931467 (+) True G10203
TU11227 lncRNA upstream 83877 15929668 ~ 15929964 (+) True G10200
TU11336 lncRNA downstream 171813 16185895 ~ 16186172 (+) True G10293
TU11337 lncRNA downstream 172188 16186270 ~ 16186508 (+) True G10294
TU11348 lncRNA downstream 189005 16203087 ~ 16203431 (+) True G10305
TU11351 lncRNA downstream 193177 16207259 ~ 16207561 (+) True G10308
TU11359 lncRNA downstream 205084 16219166 ~ 16219378 (+) True G10316
CI01000000_15964514_15964804.mRNA mRNA upstream 48880 15964327 ~ 15964961 (+) True CI01000000_15964514_15964804
CI01000000_15893372_15894283.mRNA mRNA upstream 118948 15891679 ~ 15894893 (+) True CI01000000_15893372_15894283
CI01000000_15684820_15696865.mRNA mRNA upstream 316726 15684495 ~ 15697115 (+) True CI01000000_15684820_15696865
CI01000000_15620007_15622711.mRNA mRNA upstream 390999 15620007 ~ 15622842 (+) True CI01000000_15620007_15622711
CI01000000_15519933_15528742.mRNA mRNA upstream 484946 15519933 ~ 15528895 (+) True CI01000000_15519933_15528742
CI01000000_16034357_16056363.mRNA mRNA downstream 19816 16033898 ~ 16056594 (+) True CI01000000_16034357_16056363
CI01000000_16066787_16081915.mRNA mRNA downstream 52227 16066309 ~ 16082483 (+) True CI01000000_16066787_16081915
CI01000000_16087757_16091758.mRNA mRNA downstream 73351 16087433 ~ 16092035 (+) True CI01000000_16087757_16091758
CI01000000_16096527_16100582.mRNA mRNA downstream 82445 16096527 ~ 16101229 (+) True CI01000000_16096527_16100582
CI01000000_16106717_16114328.mRNA mRNA downstream 92516 16106598 ~ 16114355 (+) True CI01000000_16106717_16114328
TU11228 other upstream 83279 15930266 ~ 15930562 (+) True G10201
TU10171 other upstream 1778900 14227437 ~ 14234941 (+) True G9201
TU8285 other upstream 3834833 12178369 ~ 12179008 (+) True G7522
TU8274 other upstream 3876833 12136522 ~ 12137008 (+) True G7514
TU7890 other upstream 4768208 11244457 ~ 11245633 (+) True G7153
TU12413 other downstream 1325072 17339154 ~ 17346200 (+) False CI01000000_17339270_17345013
TU12414 other downstream 1325072 17339154 ~ 17346177 (+) True CI01000000_17339270_17345013
TU12656 other downstream 1869871 17883953 ~ 17887462 (+) False G11465
TU12729 other downstream 2018657 18032739 ~ 18164112 (+) True G11521
TU13048 other downstream 2666785 18680867 ~ 18710278 (+) False G11801

Expression Profile