RNA id: TU11336


Basic Information

Item Value
RNA id TU11336
length 278
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G10293
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 16185895 ~ 16186172 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTCTTCTAAACATGGTTTCTCTCATTTTAGGCAGTTTTTATCACGCTGATATTAGTTAAAGTGTTCTTTCTTTAAATAAGTTTGTTTTAATTTAGTTATTTGAGGCTATAGACTTTATGCGCCAGAGAAACAAGCGCGCCGCCATCTTTATAAAATTGTCTTTGAACTTCCGTTTTGCGGTAGCTATGTACATTTATGGCATCACTGTCAAAGAAATAATTAGCTGGTTAAGTGGATTTACTTCTTGTAGAGTCAATGAAAGTTATCATGAGCATTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11295 lncRNA upstream 171813 16013841 ~ 16014082 (+) True G10255
TU11276 lncRNA upstream 184246 16000852 ~ 16001649 (+) True G10240
TU11240 lncRNA upstream 231446 15953799 ~ 15954449 (+) True G10209
TU11212 lncRNA upstream 252519 15932984 ~ 15933376 (+) True G10185
TU11230 lncRNA upstream 254428 15931260 ~ 15931467 (+) True G10203
TU11337 lncRNA downstream 98 16186270 ~ 16186508 (+) True G10294
TU11348 lncRNA downstream 16915 16203087 ~ 16203431 (+) True G10305
TU11351 lncRNA downstream 21087 16207259 ~ 16207561 (+) True G10308
TU11359 lncRNA downstream 32994 16219166 ~ 16219378 (+) True G10316
TU11362 lncRNA downstream 34098 16220270 ~ 16220876 (+) True G10319
CI01000000_16142079_16144991.mRNA mRNA upstream 40616 16142079 ~ 16145279 (+) True CI01000000_16142079_16144991
CI01000000_16106717_16114328.mRNA mRNA upstream 71540 16106598 ~ 16114355 (+) True CI01000000_16106717_16114328
CI01000000_16096527_16100582.mRNA mRNA upstream 84666 16096527 ~ 16101229 (+) True CI01000000_16096527_16100582
CI01000000_16087757_16091758.mRNA mRNA upstream 93860 16087433 ~ 16092035 (+) True CI01000000_16087757_16091758
CI01000000_16066787_16081915.mRNA mRNA upstream 103412 16066309 ~ 16082483 (+) True CI01000000_16066787_16081915
CI01000000_16226281_16275284.mRNA mRNA downstream 40109 16226281 ~ 16275477 (+) True CI01000000_16226281_16275284
CI01000000_16282545_16293288.mRNA mRNA downstream 95954 16282126 ~ 16294665 (+) True CI01000000_16282545_16293288
CI01000000_16339900_16340277.mRNA mRNA downstream 153728 16339900 ~ 16340381 (+) False CI01000000_16339900_16340277
CI01000000_16362843_16368520.mRNA mRNA downstream 176519 16362691 ~ 16368520 (+) True CI01000000_16362843_16368520
CI01000000_16375958_16382103.mRNA mRNA downstream 187786 16373958 ~ 16382558 (+) True CI01000000_16375958_16382103
TU11228 other upstream 255333 15930266 ~ 15930562 (+) True G10201
TU10171 other upstream 1950954 14227437 ~ 14234941 (+) True G9201
TU8285 other upstream 4006887 12178369 ~ 12179008 (+) True G7522
TU8274 other upstream 4048887 12136522 ~ 12137008 (+) True G7514
TU7890 other upstream 4940262 11244457 ~ 11245633 (+) True G7153
TU12413 other downstream 1152982 17339154 ~ 17346200 (+) False CI01000000_17339270_17345013
TU12414 other downstream 1152982 17339154 ~ 17346177 (+) True CI01000000_17339270_17345013
TU12656 other downstream 1697781 17883953 ~ 17887462 (+) False G11465
TU12729 other downstream 1846567 18032739 ~ 18164112 (+) True G11521
TU13048 other downstream 2494695 18680867 ~ 18710278 (+) False G11801

Expression Profile