RNA id: TU11351


Basic Information

Item Value
RNA id TU11351
length 303
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G10308
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 16207259 ~ 16207561 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTGGTACCCACTGATTGGGTTGTGCCAGTATTTTACGTGAATATGACACGAGTGAAGCACAAAGCTTTGTTTACAGAAGATATAGGCTAATAGGTTAGCAATTAAATGTGACATCGCAGCCATGGAAACATTTTGGTTCATGCCGAATGAGAGAGGTACGTGAGTCCATACATTTAAGCTTTGTATTCTGTTTTGCGAATCGCGATCTGGTCAACCGATTATCAGAGAATTTAACAATAATCCATTAGTTATTCCACTGAACATGGAATCTCTGTTTCTTTTCCCAAATCTTAACTCACGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11348 lncRNA upstream 3828 16203087 ~ 16203431 (+) True G10305
TU11337 lncRNA upstream 20751 16186270 ~ 16186508 (+) True G10294
TU11336 lncRNA upstream 21087 16185895 ~ 16186172 (+) True G10293
TU11295 lncRNA upstream 193177 16013841 ~ 16014082 (+) True G10255
TU11276 lncRNA upstream 205610 16000852 ~ 16001649 (+) True G10240
TU11359 lncRNA downstream 11605 16219166 ~ 16219378 (+) True G10316
TU11362 lncRNA downstream 12709 16220270 ~ 16220876 (+) True G10319
TU11368 lncRNA downstream 83082 16290643 ~ 16290871 (+) True G10325
TU11370 lncRNA downstream 83919 16291480 ~ 16291708 (+) True G10327
TU11371 lncRNA downstream 84466 16292027 ~ 16292245 (+) True G10328
CI01000000_16142079_16144991.mRNA mRNA upstream 61980 16142079 ~ 16145279 (+) True CI01000000_16142079_16144991
CI01000000_16106717_16114328.mRNA mRNA upstream 92904 16106598 ~ 16114355 (+) True CI01000000_16106717_16114328
CI01000000_16096527_16100582.mRNA mRNA upstream 106030 16096527 ~ 16101229 (+) True CI01000000_16096527_16100582
CI01000000_16087757_16091758.mRNA mRNA upstream 115224 16087433 ~ 16092035 (+) True CI01000000_16087757_16091758
CI01000000_16066787_16081915.mRNA mRNA upstream 124776 16066309 ~ 16082483 (+) True CI01000000_16066787_16081915
CI01000000_16226281_16275284.mRNA mRNA downstream 18720 16226281 ~ 16275477 (+) True CI01000000_16226281_16275284
CI01000000_16282545_16293288.mRNA mRNA downstream 74565 16282126 ~ 16294665 (+) True CI01000000_16282545_16293288
CI01000000_16339900_16340277.mRNA mRNA downstream 132339 16339900 ~ 16340381 (+) False CI01000000_16339900_16340277
CI01000000_16362843_16368520.mRNA mRNA downstream 155130 16362691 ~ 16368520 (+) True CI01000000_16362843_16368520
CI01000000_16375958_16382103.mRNA mRNA downstream 166397 16373958 ~ 16382558 (+) True CI01000000_16375958_16382103
TU11228 other upstream 276697 15930266 ~ 15930562 (+) True G10201
TU10171 other upstream 1972318 14227437 ~ 14234941 (+) True G9201
TU8285 other upstream 4028251 12178369 ~ 12179008 (+) True G7522
TU8274 other upstream 4070251 12136522 ~ 12137008 (+) True G7514
TU7890 other upstream 4961626 11244457 ~ 11245633 (+) True G7153
TU12413 other downstream 1131593 17339154 ~ 17346200 (+) False CI01000000_17339270_17345013
TU12414 other downstream 1131593 17339154 ~ 17346177 (+) True CI01000000_17339270_17345013
TU12656 other downstream 1676392 17883953 ~ 17887462 (+) False G11465
TU12729 other downstream 1825178 18032739 ~ 18164112 (+) True G11521
TU13048 other downstream 2473306 18680867 ~ 18710278 (+) False G11801

Expression Profile