RNA id: TU11359


Basic Information

Item Value
RNA id TU11359
length 213
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G10316
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 16219166 ~ 16219378 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCATTAGTGTGCAGAAATTGAGTTGCAATGATGAGATCACTGCTTTCATGCGCTCAAAAATCAGTCTGTGATCGGCTACAATGTTCATCACTGCAACCTTTCATGCCACGATCTAAATATAATGCCATAGATTTAAATGTAATGCAACACTTTTCACGATTAGTAAACCTTGAGAGCTGTAATAGTAAAAAAGTGCTAAAAGTTTTCGAGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11351 lncRNA upstream 11605 16207259 ~ 16207561 (+) True G10308
TU11348 lncRNA upstream 15735 16203087 ~ 16203431 (+) True G10305
TU11337 lncRNA upstream 32658 16186270 ~ 16186508 (+) True G10294
TU11336 lncRNA upstream 32994 16185895 ~ 16186172 (+) True G10293
TU11295 lncRNA upstream 205084 16013841 ~ 16014082 (+) True G10255
TU11362 lncRNA downstream 892 16220270 ~ 16220876 (+) True G10319
TU11368 lncRNA downstream 71265 16290643 ~ 16290871 (+) True G10325
TU11370 lncRNA downstream 72102 16291480 ~ 16291708 (+) True G10327
TU11371 lncRNA downstream 72649 16292027 ~ 16292245 (+) True G10328
TU11380 lncRNA downstream 77550 16296928 ~ 16343449 (+) True G10330
CI01000000_16142079_16144991.mRNA mRNA upstream 73887 16142079 ~ 16145279 (+) True CI01000000_16142079_16144991
CI01000000_16106717_16114328.mRNA mRNA upstream 104811 16106598 ~ 16114355 (+) True CI01000000_16106717_16114328
CI01000000_16096527_16100582.mRNA mRNA upstream 117937 16096527 ~ 16101229 (+) True CI01000000_16096527_16100582
CI01000000_16087757_16091758.mRNA mRNA upstream 127131 16087433 ~ 16092035 (+) True CI01000000_16087757_16091758
CI01000000_16066787_16081915.mRNA mRNA upstream 136683 16066309 ~ 16082483 (+) True CI01000000_16066787_16081915
CI01000000_16226281_16275284.mRNA mRNA downstream 6903 16226281 ~ 16275477 (+) True CI01000000_16226281_16275284
CI01000000_16282545_16293288.mRNA mRNA downstream 62748 16282126 ~ 16294665 (+) True CI01000000_16282545_16293288
CI01000000_16339900_16340277.mRNA mRNA downstream 120522 16339900 ~ 16340381 (+) False CI01000000_16339900_16340277
CI01000000_16362843_16368520.mRNA mRNA downstream 143313 16362691 ~ 16368520 (+) True CI01000000_16362843_16368520
CI01000000_16375958_16382103.mRNA mRNA downstream 154580 16373958 ~ 16382558 (+) True CI01000000_16375958_16382103
TU11228 other upstream 288604 15930266 ~ 15930562 (+) True G10201
TU10171 other upstream 1984225 14227437 ~ 14234941 (+) True G9201
TU8285 other upstream 4040158 12178369 ~ 12179008 (+) True G7522
TU8274 other upstream 4082158 12136522 ~ 12137008 (+) True G7514
TU7890 other upstream 4973533 11244457 ~ 11245633 (+) True G7153
TU12413 other downstream 1119776 17339154 ~ 17346200 (+) False CI01000000_17339270_17345013
TU12414 other downstream 1119776 17339154 ~ 17346177 (+) True CI01000000_17339270_17345013
TU12656 other downstream 1664575 17883953 ~ 17887462 (+) False G11465
TU12729 other downstream 1813361 18032739 ~ 18164112 (+) True G11521
TU13048 other downstream 2461489 18680867 ~ 18710278 (+) False G11801

Expression Profile