RNA id: TU11411


Basic Information

Item Value
RNA id TU11411
length 307
lncRNA type intronic
GC content 0.33
exon number 1
gene id G10359
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 16354892 ~ 16355198 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGTATAATTTTATATAGGCCTATGTACAGTGTACTGGCTCATTTTAAAGTATCTTACATTGTTGATATAAATTATATTGGTTCATTAGGTATTTTTATGTTATGTTTTTTTTTAGTGCTGTCAATCAATTAAAAAATTAACTAATTAATCACACATTTTTTTCTGTAATTAATATTGTAATAATTTCACACTTGCTCTCCAAATTAATAGTAGAAACAACTTAAAGACAGTATATTTTAAAATTTTTATGAATGAAGGCCAGTATCACTGATACTTATACTGATGTCTCTATAAAACTGATTTTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11410 lncRNA upstream 60 16354572 ~ 16354832 (+) True G10358
TU11409 lncRNA upstream 1038 16353638 ~ 16353854 (+) True G10357
TU11408 lncRNA upstream 1285 16353404 ~ 16353607 (+) True G10356
TU11407 lncRNA upstream 2197 16352414 ~ 16352695 (+) True G10355
TU11406 lncRNA upstream 2724 16351855 ~ 16352168 (+) True G10354
TU11412 lncRNA downstream 535 16355733 ~ 16355938 (+) True G10360
TU11423 lncRNA downstream 31144 16386342 ~ 16386725 (+) True G10364
TU11441 lncRNA downstream 68160 16423358 ~ 16427175 (+) True G10380
TU11973 lncRNA downstream 169387 16524585 ~ 16524785 (+) True G10869
TU11982 lncRNA downstream 180070 16535268 ~ 16535522 (+) True G10878
CI01000000_16339900_16340277.mRNA mRNA upstream 14511 16339900 ~ 16340381 (+) False CI01000000_16339900_16340277
CI01000000_16282545_16293288.mRNA mRNA upstream 60227 16282126 ~ 16294665 (+) True CI01000000_16282545_16293288
CI01000000_16226281_16275284.mRNA mRNA upstream 79415 16226281 ~ 16275477 (+) True CI01000000_16226281_16275284
CI01000000_16142079_16144991.mRNA mRNA upstream 209613 16142079 ~ 16145279 (+) True CI01000000_16142079_16144991
CI01000000_16106717_16114328.mRNA mRNA upstream 240537 16106598 ~ 16114355 (+) True CI01000000_16106717_16114328
CI01000000_16362843_16368520.mRNA mRNA downstream 7493 16362691 ~ 16368520 (+) True CI01000000_16362843_16368520
CI01000000_16375958_16382103.mRNA mRNA downstream 18760 16373958 ~ 16382558 (+) True CI01000000_16375958_16382103
CI01000000_16468276_16479177.mRNA mRNA downstream 112291 16467489 ~ 16481059 (+) True CI01000000_16468276_16479177
CI01000000_16573665_16580545.mRNA mRNA downstream 218467 16573665 ~ 16580958 (+) True CI01000000_16573665_16580545
CI01000000_16611284_16612778.mRNA mRNA downstream 256086 16611284 ~ 16613885 (+) True CI01000000_16611284_16612778
TU11228 other upstream 424330 15930266 ~ 15930562 (+) True G10201
TU10171 other upstream 2119951 14227437 ~ 14234941 (+) True G9201
TU8285 other upstream 4175884 12178369 ~ 12179008 (+) True G7522
TU8274 other upstream 4217884 12136522 ~ 12137008 (+) True G7514
TU7890 other upstream 5109259 11244457 ~ 11245633 (+) True G7153
TU12413 other downstream 983956 17339154 ~ 17346200 (+) False CI01000000_17339270_17345013
TU12414 other downstream 983956 17339154 ~ 17346177 (+) True CI01000000_17339270_17345013
TU12656 other downstream 1528755 17883953 ~ 17887462 (+) False G11465
TU12729 other downstream 1677541 18032739 ~ 18164112 (+) True G11521
TU13048 other downstream 2325669 18680867 ~ 18710278 (+) False G11801

Expression Profile