RNA id: TU11412


Basic Information

Item Value
RNA id TU11412
length 206
lncRNA type intronic
GC content 0.49
exon number 1
gene id G10360
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 16355733 ~ 16355938 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGTCACTTTAAGAGCTGCCGCTGCCGATCATGACGCGGATCTGACGCGCATCTCATTTTCTCACAACTCTTTACGTTTATTTAAGATGTCATTTAACTAATTTAAGACTGCTCTTATGAGGATACTCGACAAAACGGGCATTTTGGCATAATTCTGTGTGTTATTGTTTGTTCAAGCGTGAAAGAGACTGGCGCGCATATTTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11411 lncRNA upstream 535 16354892 ~ 16355198 (+) True G10359
TU11410 lncRNA upstream 901 16354572 ~ 16354832 (+) True G10358
TU11409 lncRNA upstream 1879 16353638 ~ 16353854 (+) True G10357
TU11408 lncRNA upstream 2126 16353404 ~ 16353607 (+) True G10356
TU11407 lncRNA upstream 3038 16352414 ~ 16352695 (+) True G10355
TU11423 lncRNA downstream 30404 16386342 ~ 16386725 (+) True G10364
TU11441 lncRNA downstream 67420 16423358 ~ 16427175 (+) True G10380
TU11973 lncRNA downstream 168647 16524585 ~ 16524785 (+) True G10869
TU11982 lncRNA downstream 179330 16535268 ~ 16535522 (+) True G10878
TU11983 lncRNA downstream 179693 16535631 ~ 16535977 (+) True G10879
CI01000000_16339900_16340277.mRNA mRNA upstream 15352 16339900 ~ 16340381 (+) False CI01000000_16339900_16340277
CI01000000_16282545_16293288.mRNA mRNA upstream 61068 16282126 ~ 16294665 (+) True CI01000000_16282545_16293288
CI01000000_16226281_16275284.mRNA mRNA upstream 80256 16226281 ~ 16275477 (+) True CI01000000_16226281_16275284
CI01000000_16142079_16144991.mRNA mRNA upstream 210454 16142079 ~ 16145279 (+) True CI01000000_16142079_16144991
CI01000000_16106717_16114328.mRNA mRNA upstream 241378 16106598 ~ 16114355 (+) True CI01000000_16106717_16114328
CI01000000_16362843_16368520.mRNA mRNA downstream 6753 16362691 ~ 16368520 (+) True CI01000000_16362843_16368520
CI01000000_16375958_16382103.mRNA mRNA downstream 18020 16373958 ~ 16382558 (+) True CI01000000_16375958_16382103
CI01000000_16468276_16479177.mRNA mRNA downstream 111551 16467489 ~ 16481059 (+) True CI01000000_16468276_16479177
CI01000000_16573665_16580545.mRNA mRNA downstream 217727 16573665 ~ 16580958 (+) True CI01000000_16573665_16580545
CI01000000_16611284_16612778.mRNA mRNA downstream 255346 16611284 ~ 16613885 (+) True CI01000000_16611284_16612778
TU11228 other upstream 425171 15930266 ~ 15930562 (+) True G10201
TU10171 other upstream 2120792 14227437 ~ 14234941 (+) True G9201
TU8285 other upstream 4176725 12178369 ~ 12179008 (+) True G7522
TU8274 other upstream 4218725 12136522 ~ 12137008 (+) True G7514
TU7890 other upstream 5110100 11244457 ~ 11245633 (+) True G7153
TU12413 other downstream 983216 17339154 ~ 17346200 (+) False CI01000000_17339270_17345013
TU12414 other downstream 983216 17339154 ~ 17346177 (+) True CI01000000_17339270_17345013
TU12656 other downstream 1528015 17883953 ~ 17887462 (+) False G11465
TU12729 other downstream 1676801 18032739 ~ 18164112 (+) True G11521
TU13048 other downstream 2324929 18680867 ~ 18710278 (+) False G11801

Expression Profile