RNA id: TU11983


Basic Information

Item Value
RNA id TU11983
length 347
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G10879
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 16535631 ~ 16535977 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTAATCAATTTAATTCCTTAAATGTCAACCATTTAAAACAAGTAAAATTTAAGTAAAATTTAAACAAAAAATATCTGAATAACAGACAGTGACAAAGATGAATTAAGAACTCTTTGTTTTTTATTGCCAACATTGAAGACACCTGATGATAACAAGCAGAATCACTGAAGGAAAGAGAAACACATGAATTAACAGAGGTTTAGATGTTGATGTTGATTTTATTGAAAATGTTTGGTCACCCTTATGGTGATCAGTGTTTCATTTAGTTGGCCAGTTTGACTCTTTGCTTTTTATGTCAGTTTGTGGTTTTTGTAATGGTGTTTGCTAATTTTACACATTTTAAATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11982 lncRNA upstream 109 16535268 ~ 16535522 (+) True G10878
TU11973 lncRNA upstream 10846 16524585 ~ 16524785 (+) True G10869
TU11441 lncRNA upstream 108456 16423358 ~ 16427175 (+) True G10380
TU11423 lncRNA upstream 148906 16386342 ~ 16386725 (+) True G10364
TU11412 lncRNA upstream 179693 16355733 ~ 16355938 (+) True G10360
TU11995 lncRNA downstream 20149 16556126 ~ 16556496 (+) True G10891
TU11997 lncRNA downstream 23238 16559215 ~ 16559484 (+) True G10893
TU12014 lncRNA downstream 45335 16581312 ~ 16584118 (+) True G10903
TU12022 lncRNA downstream 90031 16626008 ~ 16626492 (+) True G10911
TU12023 lncRNA downstream 90976 16626953 ~ 16627308 (+) True G10912
CI01000000_16468276_16479177.mRNA mRNA upstream 54572 16467489 ~ 16481059 (+) True CI01000000_16468276_16479177
CI01000000_16375958_16382103.mRNA mRNA upstream 153073 16373958 ~ 16382558 (+) True CI01000000_16375958_16382103
CI01000000_16362843_16368520.mRNA mRNA upstream 167111 16362691 ~ 16368520 (+) True CI01000000_16362843_16368520
CI01000000_16339900_16340277.mRNA mRNA upstream 195250 16339900 ~ 16340381 (+) False CI01000000_16339900_16340277
CI01000000_16282545_16293288.mRNA mRNA upstream 240966 16282126 ~ 16294665 (+) True CI01000000_16282545_16293288
CI01000000_16573665_16580545.mRNA mRNA downstream 37688 16573665 ~ 16580958 (+) True CI01000000_16573665_16580545
CI01000000_16611284_16612778.mRNA mRNA downstream 75307 16611284 ~ 16613885 (+) True CI01000000_16611284_16612778
CI01000000_16676128_16679215.mRNA mRNA downstream 140059 16676036 ~ 16679240 (+) True CI01000000_16676128_16679215
CI01000000_16781396_16802242.mRNA mRNA downstream 245419 16781396 ~ 16802418 (+) True CI01000000_16781396_16802242
CI01000000_16835058_16848950.mRNA mRNA downstream 298943 16834920 ~ 16849092 (+) True CI01000000_16835058_16848950
TU11228 other upstream 605069 15930266 ~ 15930562 (+) True G10201
TU10171 other upstream 2300690 14227437 ~ 14234941 (+) True G9201
TU8285 other upstream 4356623 12178369 ~ 12179008 (+) True G7522
TU8274 other upstream 4398623 12136522 ~ 12137008 (+) True G7514
TU7890 other upstream 5289998 11244457 ~ 11245633 (+) True G7153
TU12413 other downstream 803177 17339154 ~ 17346200 (+) False CI01000000_17339270_17345013
TU12414 other downstream 803177 17339154 ~ 17346177 (+) True CI01000000_17339270_17345013
TU12656 other downstream 1347976 17883953 ~ 17887462 (+) False G11465
TU12729 other downstream 1496762 18032739 ~ 18164112 (+) True G11521
TU13048 other downstream 2144890 18680867 ~ 18710278 (+) False G11801

Expression Profile