RNA id: TU12022


Basic Information

Item Value
RNA id TU12022
length 385
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G10911
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 16626008 ~ 16626492 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTCAGTCAGAAATGTCAAGTTTCTCCAGAATATCCATCCATTCTTCTATCCTAGGAGACTCTTACAGAACAAAGGCGTAGCTTGATGACGGAATCATGGGAGGTGTTGTCTTCACATCTACAGCCGGTGGAAAAGAATCCAATGGGACTCATATTCAGAAATCATATTCATGGATGAGATAATGTATTAAAGATTTATTAACATTACTGTAGTATGAAGCAGGGTGTGGCTGAAAACTGTTGGAGCGGAATGAGGCCGCTGGAGCTACTGCTAATGAGAGACGAGCGCGACACACACGGCTCAGGAACAGTGGAGCTTTCATTATGCCTCAGACGAGGTCATGTCATGAGTATGTGGGGTAAAGCAGCGCTGTTTTATCATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12014 lncRNA upstream 41890 16581312 ~ 16584118 (+) True G10903
TU11997 lncRNA upstream 66524 16559215 ~ 16559484 (+) True G10893
TU11995 lncRNA upstream 69512 16556126 ~ 16556496 (+) True G10891
TU11983 lncRNA upstream 90031 16535631 ~ 16535977 (+) True G10879
TU11982 lncRNA upstream 90486 16535268 ~ 16535522 (+) True G10878
TU12023 lncRNA downstream 461 16626953 ~ 16627308 (+) True G10912
TU12084 lncRNA downstream 64770 16691262 ~ 16691550 (+) True G10956
TU12096 lncRNA downstream 110540 16737032 ~ 16737247 (+) True G10968
TU12062 lncRNA downstream 275438 16901930 ~ 16902606 (+) True G10937
TU12059 lncRNA downstream 294800 16921292 ~ 16921561 (+) True G10934
CI01000000_16611284_16612778.mRNA mRNA upstream 12123 16611284 ~ 16613885 (+) True CI01000000_16611284_16612778
CI01000000_16573665_16580545.mRNA mRNA upstream 45050 16573665 ~ 16580958 (+) True CI01000000_16573665_16580545
CI01000000_16468276_16479177.mRNA mRNA upstream 144949 16467489 ~ 16481059 (+) True CI01000000_16468276_16479177
CI01000000_16375958_16382103.mRNA mRNA upstream 243450 16373958 ~ 16382558 (+) True CI01000000_16375958_16382103
CI01000000_16362843_16368520.mRNA mRNA upstream 257488 16362691 ~ 16368520 (+) True CI01000000_16362843_16368520
CI01000000_16676128_16679215.mRNA mRNA downstream 49544 16676036 ~ 16679240 (+) True CI01000000_16676128_16679215
CI01000000_16781396_16802242.mRNA mRNA downstream 154904 16781396 ~ 16802418 (+) True CI01000000_16781396_16802242
CI01000000_16835058_16848950.mRNA mRNA downstream 208428 16834920 ~ 16849092 (+) True CI01000000_16835058_16848950
CI01000000_16861880_16863508.mRNA mRNA downstream 233951 16860443 ~ 16863777 (+) True CI01000000_16861880_16863508
CI01000000_16871696_16877904.mRNA mRNA downstream 245204 16871696 ~ 16878004 (+) True CI01000000_16871696_16877904
TU11228 other upstream 695446 15930266 ~ 15930562 (+) True G10201
TU10171 other upstream 2391067 14227437 ~ 14234941 (+) True G9201
TU8285 other upstream 4447000 12178369 ~ 12179008 (+) True G7522
TU8274 other upstream 4489000 12136522 ~ 12137008 (+) True G7514
TU7890 other upstream 5380375 11244457 ~ 11245633 (+) True G7153
TU12413 other downstream 712662 17339154 ~ 17346200 (+) False CI01000000_17339270_17345013
TU12414 other downstream 712662 17339154 ~ 17346177 (+) True CI01000000_17339270_17345013
TU12656 other downstream 1257461 17883953 ~ 17887462 (+) False G11465
TU12729 other downstream 1406247 18032739 ~ 18164112 (+) True G11521
TU13048 other downstream 2054375 18680867 ~ 18710278 (+) False G11801

Expression Profile