RNA id: TU12242


Basic Information

Item Value
RNA id TU12242
length 657
RNA type TUCP
GC content 0.49
exon number 2
gene id G11107
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 16667118 ~ 16667947 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGCCACACACGCTTGACACCATCTGAACCAAATAAGTTTATCTTGGTCTCATCAGACCACAGGACATGGTTCCAGTAATCCATGTCCTTAGTCTGCTTGTCTTCAGCAAACTGTTTGCGGGCTTTCTTGTGCATCATCTTTAGAAGAGTCTTCCTTCTGGGACGACAGCCATGCAGACCAATTTGATGCAGTGTGCGGCGTATGGTCTGAGCACTGACAGGCTGACCCCCCACCCCTTCAACCTCTGCAGCAATGCTGGCAGCACTCATACGTCTATTTCCCAAACACAACCTCTGGATATGACGCTGAGCACGTGCACTCAACTTCTTTGGTCGACCATGGCGAGGCCAGTTCTGAGTGGAACCTGTCCTGTTAAACCGCTGTATGGTCTTGGCCACCGTGCTGCAGCTCAGTTTCAGGGTCTTGGCAATCTTCTTATAGCCTACAGCATCTTTATGTAGAGCAACAATTCTTTTTTCAGATCCTCAGAGAGTTCTTTGCCATGAGGTGCCATGTTGAACTTCCAGTGACCAGTATGAGAGAGTGAGAGCGATAACACCAAATTGAACACACCTGCTCCCCATTCACACCTGAGACCTTGTAACACTAACGAGTCACATGACACCGGGGAGAGAAAATTGGGTTAATTGGGCCCAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12219 lncRNA downstream 81453 16585444 ~ 16585665 (-) True G11086
TU12215 lncRNA downstream 83647 16582968 ~ 16583471 (-) False CI01000000_16583129_16583311
TU12214 lncRNA downstream 83647 16583127 ~ 16583471 (-) True CI01000000_16583129_16583311
TU11976 lncRNA downstream 139351 16527298 ~ 16527767 (-) True G10872
TU11974 lncRNA downstream 141557 16525222 ~ 16525561 (-) True G10870
TU12243 lncRNA upstream 268 16668215 ~ 16668422 (-) True G11108
TU12261 lncRNA upstream 40073 16708020 ~ 16708393 (-) True G11121
TU12315 lncRNA upstream 156639 16824586 ~ 16825343 (-) True G11173
TU12317 lncRNA upstream 161283 16829230 ~ 16829465 (-) True G11175
TU12318 lncRNA upstream 162607 16830554 ~ 16830832 (-) True G11176
CI01000000_16639394_16651227.mRNA mRNA downstream 15891 16639394 ~ 16651227 (-) True CI01000000_16639394_16651227
CI01000000_16628234_16631045.mRNA mRNA downstream 35304 16627697 ~ 16631814 (-) True CI01000000_16628234_16631045
CI01000000_16583129_16583311.mRNA mRNA downstream 83807 16583114 ~ 16583311 (-) False CI01000000_16583129_16583311
CI01000000_16395230_16423976.mRNA mRNA downstream 243142 16394132 ~ 16423976 (-) True CI01000000_16395230_16423976
CI01000000_16354158_16360016.mRNA mRNA downstream 306905 16353959 ~ 16360213 (-) False CI01000000_16354158_16360016
CI01000000_16813179_16823209.mRNA mRNA upstream 144906 16812853 ~ 16823302 (-) True CI01000000_16813179_16823209
CI01000000_16946558_16965306.mRNA mRNA upstream 278510 16946457 ~ 16965306 (-) True CI01000000_16946558_16965306
CI01000000_16992347_17023908.mRNA mRNA upstream 323661 16991608 ~ 17024074 (-) True CI01000000_16992347_17023908
CI01000000_17034650_17052531.mRNA mRNA upstream 366692 17034639 ~ 17052531 (-) True CI01000000_17034650_17052531
CI01000000_17139308_17145015.mRNA mRNA upstream 471235 17139182 ~ 17145409 (-) True CI01000000_17139308_17145015
TU11724 other downstream 302571 16362508 ~ 16364547 (-) False G10645
TU11754 other downstream 435992 16226287 ~ 16231126 (-) True G10672
TU10602 other downstream 2168524 14483120 ~ 14498594 (-) True G9601
TU10603 other downstream 2320584 14341002 ~ 14346534 (-) True G9602
TU9950 other downstream 2940028 13726800 ~ 13727090 (-) True G9036

Expression Profile