RNA id: TU12096


Basic Information

Item Value
RNA id TU12096
length 216
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G10968
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 16737032 ~ 16737247 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTTGATAGATACTGACCACTGCAGACCGGGAACACCCCACAAGAGCTGCAGTTTTGGAGATGCTCTGACCCAGTCGTCTAGCCATCACAATTTGACCCTTGTCAAACTCGCTCAAATCCTTACGCTTGACCATTTTTCCTGCTTCTAACACATCAACTTTGAGGACAAAATGTTCACTTGCTGCCTAATATATCGCACCCACTAACAGGTGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12084 lncRNA upstream 45482 16691262 ~ 16691550 (+) True G10956
TU12023 lncRNA upstream 109724 16626953 ~ 16627308 (+) True G10912
TU12022 lncRNA upstream 110540 16626008 ~ 16626492 (+) True G10911
TU12014 lncRNA upstream 152914 16581312 ~ 16584118 (+) True G10903
TU11997 lncRNA upstream 177548 16559215 ~ 16559484 (+) True G10893
TU12062 lncRNA downstream 164683 16901930 ~ 16902606 (+) True G10937
TU12059 lncRNA downstream 184045 16921292 ~ 16921561 (+) True G10934
TU12147 lncRNA downstream 259392 16996639 ~ 16996931 (+) True G11019
TU12156 lncRNA downstream 267155 17004402 ~ 17004656 (+) True G11028
TU12167 lncRNA downstream 278093 17015340 ~ 17015573 (+) True G11039
CI01000000_16676128_16679215.mRNA mRNA upstream 57792 16676036 ~ 16679240 (+) True CI01000000_16676128_16679215
CI01000000_16611284_16612778.mRNA mRNA upstream 123147 16611284 ~ 16613885 (+) True CI01000000_16611284_16612778
CI01000000_16573665_16580545.mRNA mRNA upstream 156074 16573665 ~ 16580958 (+) True CI01000000_16573665_16580545
CI01000000_16468276_16479177.mRNA mRNA upstream 255973 16467489 ~ 16481059 (+) True CI01000000_16468276_16479177
CI01000000_16375958_16382103.mRNA mRNA upstream 354474 16373958 ~ 16382558 (+) True CI01000000_16375958_16382103
CI01000000_16781396_16802242.mRNA mRNA downstream 44149 16781396 ~ 16802418 (+) True CI01000000_16781396_16802242
CI01000000_16835058_16848950.mRNA mRNA downstream 97673 16834920 ~ 16849092 (+) True CI01000000_16835058_16848950
CI01000000_16861880_16863508.mRNA mRNA downstream 123196 16860443 ~ 16863777 (+) True CI01000000_16861880_16863508
CI01000000_16871696_16877904.mRNA mRNA downstream 134449 16871696 ~ 16878004 (+) True CI01000000_16871696_16877904
CI01000000_16878307_16893681.mRNA mRNA downstream 140964 16878211 ~ 16894061 (+) True CI01000000_16878307_16893681
TU11228 other upstream 806470 15930266 ~ 15930562 (+) True G10201
TU10171 other upstream 2502091 14227437 ~ 14234941 (+) True G9201
TU8285 other upstream 4558024 12178369 ~ 12179008 (+) True G7522
TU8274 other upstream 4600024 12136522 ~ 12137008 (+) True G7514
TU7890 other upstream 5491399 11244457 ~ 11245633 (+) True G7153
TU12413 other downstream 601907 17339154 ~ 17346200 (+) False CI01000000_17339270_17345013
TU12414 other downstream 601907 17339154 ~ 17346177 (+) True CI01000000_17339270_17345013
TU12656 other downstream 1146706 17883953 ~ 17887462 (+) False G11465
TU12729 other downstream 1295492 18032739 ~ 18164112 (+) True G11521
TU13048 other downstream 1943620 18680867 ~ 18710278 (+) False G11801

Expression Profile