RNA id: TCONS_00012878


Basic Information

Item Value
RNA id TCONS_00012878
length 3862
RNA type mRNA
GC content 0.41
exon number 18
gene id XLOC_006677
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 29480010 ~ 29505946 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAACAAACACCCTTAGAAGGACACCGACATAGCTCTGTTCAATAGTGTGCTGTCTGGCCTGCTGTAACCGCTCTGCTTTGTTAGGATGAAGAATGCAAGGGAAATACAGTTTTCATCATTTCTTCTGTTAGCGCATTTCTGCTTTGTAGGAGCACAGAGTGACTATGCACCCTATTTCTATGATAATGGGCCCAACAGTAACAACGGAAATATGGCACTCCTCAATCTCTCAGAGGATACACCAAGAGGAACACAGATATATGTTCTTAATGGAACTGACCCAGAAGGCCAGCCAGTAAAGTATGGAATTACCTTTGAACCCGGATCCAAAGAGTTTTTTCGTGTTCATCCCAAATCTGGAGTAGTAACATTAATAGAGGACCTTGACAGAGAGGCACAAGATGAGATTGAAGTCTTTGTCAGCATCTCTGATAGCCTTAATAAAGTAGTTGAAAAGGTTTCAGTTTTTATCATGGATGCCAATGATGAGAGACCACAGTTTCAAAACATGCCTTCCATCGTAGATGTGCCAGAGAACACAACGTCTGGAAGTAGCATCTATAAGGTGCAGGCAGTGGACAGGGACACCGGCTCAGGAGGATCAGTCACTTACTTCCTTCAGAGCAGTGAGCAAAGCCCAAAGTTTGCCATTGACCATCATAGCGGCGTGCTGCGGATAAAACCTGGAGAATCCCTCGATTATGAAAAATCGCGGACGCATTTCATCACTGTGGTGGCAAAGgaTGGAGGAGGCATTTACAAGGGCAAGCAACAAGTGATGTCATCATCTGCTACTTTGACCATAAATGTGATCGACACTCAAGATTCTCCCCCGATTTTTATTGGAACTCCTTACTTTGGTTATGTCTATGAAGTCTCTTCGCCAGGATCTGAGATATTTACAGTTTCTGCCAAAGATGGAGACATGGATAATCCAAATACGATCATATATTCATTGGACTCTGGAGCAGATGGGTCCTTTTCCATTAATAAAACCAGTGGAGTCATCACTCTGAATTTGTACCCAGCAGACCTGAGGAGGGAAGTTTTTAATATTAAAGTCAAGgcATTGGAAATCAGTCCAGAAGGAAAGCGCTTGGACTTTGCCACCACCACTGTGACCATTCGGGTAGTGGATCTAAACAACCATCCACCCACATTCTATGGAGAGAATGGACCTCAAAATGTGTTCGAATTAACAATGTATGAACATCCTCAAGAGGGAGAATTTCTGAGGGGCTTGAAAATCACAGTCAATGATTCCGACCAGGGATCAAATGCAAAATTCAACCTCAGACTAGTGGGCCCGGGCCGCATGTTAAGAGTGGTTCCTCAAACTGTTCTGAATGAAGCCCAAGTCACTGTCCTAGTGGAGGATTCTGCTGCAATGGATTTTGAGAAATCACAGTTCCTGACTTTTAAgCTGCTGGCTGTAGAGATCGACACACCAGAGAGATTCAGTGCCACTGCAGACATTATCATTCATCTGCTGGACACCAATGATAACGCTCCCAAATTCACCTCTGATTTCTACATCGCCCGGATCCCAGAAAACTCACCCGGAGGATCCAATGTTGTGTCTGTGACTGCCATGGATCCCGATTCTGGTATATGGGGTGTAGTCAAATACTCCATCTATGGCTCTGGAGCCGACATCTTTCTCATTCAGGCTGATTCTGGAATCATCTACACTCAGCCTTGGGCCAGTCTGGATGCTGAGGTCAAATCCAAGTATAACTTCTACGTGAAAGCCGAAGACCCTGAAGGAAAATACAGCCTCGCGGAAGTCTTTGTCACCATTACTGACCTCAATGACCATCCACCAGCGTTTAATGAAAACTCTTTGGAGCAGACCATGGTGATTGGTGCACCTGTCAAAATAGAgGCGATTGATGAAGATGCAGAGGAGCCCAACAATCTCATTGAATACTCCATAATGAAAGCCGATCCAGACAACATATTTGACATTAATGCAGACACGGGAGAAATAAAGCTGAAGCCGTACATCAAGTCAATGGACATTGTCCAGAATATCACCAATCAGAGAGACTGTACCTGGTCTGTTGTTGTTCAGGCTAAAGACAGAGGTTCACCATCCTTTAGCACAACCACAGTGGTAAAGATTGACATCACAGAAGCGACTCCACTCAAGGGACCTTTGACGTCCTTTTTTATGAATAGTAGGGAAAATCCCATGCATTTCCTAGGCTTGATAAGTGGTGTTATTCTAATCTTAGTCTTTGTGACAGTCATTATCTCTACTGTAATATTTGTGAGAAGAAACAAGGCCAACAGGATTCTACCTTCCCGTCGCATCATACGAAAGAAGCGTAAACCCCAGAAACAAGACGACTTCCAAGAACCATTCAGAGAAGAGCAGGAGATCCCTAGAGCAGACAATGTCAACTTTAACAATAACATCAAAGTGTGTTCTCATCGAACACCTCCATCACCTCCGAATGCCCCAGTCATGCCTCCACCATTGCCAAGTCACTGTAGACATGGTGAACGAGAATGGACAGTACCTACAGTTTCTGCATCTGTAGCGTCCAAGTCAAAGAAGAAATCCCACCGGTGTAAAGACAATCCTGTTAATACAGCGCTAGTTTCTGAGCTCAAACTTAAACTGGAACAGAAAAACATGGCCAACCGATACTGATAAGTTGAAATGCATGTGAAAATCTCAGTGTTCAATGGAAAGCAGACAGTTTCCCAGGCTAATTCATTGACAAGTTTCAACAGACAAGGATAATTTCAGGAAGGATTTACACAAGCACACCAACCCAGCAGGCCATCGCTGCAAGCTACTTACTGTATACTTCCTACTGCGTGCAGAGTTCAGCTAGGATTGCAAGCTGAACCTAATGAAAATGGGGGAAAGTGTCACTAGCCAAGACTAACACCCTGCTAATCACTATGACACCGTGCACTGCCCTCTTCTGGGTGGAAAATTACAGCTTCACATTTACTTTAAGCTTTTTGGATATTTTTCCATCTGTGGATACCTTATTCAGAAATAGAAATTTGATTGCAGATTATTGAAAGACATTAAACATGCctgattttttatattaattattcatcATATGATGTTTGTTTTACCTAGTATATGTGGTTTATAAAAGGGAACaatgttttgttattataattataatatatattttttacaacacaGTAGTTTCCGTGAGGCTACCAAATACACGCATTTTGGGTCTCATACAATTTCTTGTGGATGTTGAACATGCCAAAATGTGTAGTTAGTTTGATAAACTCCTAAAGGACAAATATTGTAAAAAGGACTGTGTATAGTTGTCTTTCTGTGAGGAACACCACACAGTTTGTCTATCATGTTGTAAACGTTTCATGAATTTATTTTACCTTCTCAGTTTTTTATGCAGTTcagtattaaatgtaaaatacatggAGTGACCACTGTTTATATTCAccttttgtaaataaatgaatattttattcaaaTCAAATGGTCATTAGATATAAACAGTTTTTAATGCAGTTTCTTTAATGTATTGTAggattgaaaagaaaaaaaaaactgttatatttcCTTTAATGCCACATTTCATCATATGGGCCGGCAGTGCAGTTGGTGACCTATTTTTTCTCCACCATTTATTTTAAGTACAGATTTTAATGCCTGGATTTTATGcagatttatttttcaacatacaagattttattttgtgtgtattgtgtacaaatatttcagaaaccatGTGTTGGTGGTCACGTTAAGATTTAACAAATTATGAGTTTGCTCTCTCTGGCTTTTCTAAACCTCTATTTACAGTAATTGTGGTTTTTAAGACATACACTGTGATACGTTTTTGAAGGGTGAAGACT

Function

GO:

id name namespace
GO:0021782 glial cell development biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0007155 cell adhesion biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040924-4 Predicted to enable calcium ion binding activity. Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in cone-rod dystrophy 15. Orthologous to human CDHR1 (cadherin related family member 1).

Ensembl:

ensembl_id ENSDART00000110005

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013484 lncRNA downstream 56517 29422694 ~ 29424139 (-) True XLOC_006675
TCONS_00013817 lncRNA downstream 250721 29224992 ~ 29229935 (-) True XLOC_006672
TCONS_00013816 lncRNA downstream 630762 28827293 ~ 28849894 (-) True XLOC_006671
TCONS_00013815 lncRNA downstream 632355 28827293 ~ 28848301 (-) False XLOC_006671
TCONS_00013814 lncRNA downstream 734079 28743798 ~ 28746577 (-) True XLOC_006670
TCONS_00012880 lncRNA upstream 1009 29506613 ~ 29701742 (-) False XLOC_006678
TCONS_00013818 lncRNA upstream 82807 29588411 ~ 29701910 (-) False XLOC_006678
TCONS_00013819 lncRNA upstream 82807 29588411 ~ 29701929 (-) False XLOC_006678
TCONS_00013820 lncRNA upstream 96556 29602160 ~ 29701910 (-) False XLOC_006678
TCONS_00013821 lncRNA upstream 104492 29610096 ~ 29684966 (-) False XLOC_006678
TCONS_00012876 mRNA downstream 24797 29446226 ~ 29455859 (-) True XLOC_006676
TCONS_00012875 mRNA downstream 56202 29422049 ~ 29424454 (-) False XLOC_006675
TCONS_00012874 mRNA downstream 59325 29409359 ~ 29421331 (-) True XLOC_006674
TCONS_00012873 mRNA downstream 59771 29406814 ~ 29420885 (-) False XLOC_006674
TCONS_00012872 mRNA downstream 74122 29404218 ~ 29406534 (-) True XLOC_006673
TCONS_00012882 mRNA upstream 447029 29952633 ~ 29980215 (-) False XLOC_006681
TCONS_00012884 mRNA upstream 485486 29991090 ~ 30006260 (-) True XLOC_006683
TCONS_00012885 mRNA upstream 501950 30007554 ~ 30028103 (-) False XLOC_006684
TCONS_00012886 mRNA upstream 504013 30009617 ~ 30027730 (-) True XLOC_006684
TCONS_00012887 mRNA upstream 527432 30033036 ~ 30034754 (-) True XLOC_006685
TCONS_00012862 other downstream 1063498 28285862 ~ 28417158 (-) True XLOC_006661
TCONS_00012861 other downstream 1185242 28276898 ~ 28295414 (-) False XLOC_006661
TCONS_00012858 other downstream 1301106 28179434 ~ 28179550 (-) True XLOC_006658
TCONS_00012853 other downstream 1790380 27690160 ~ 27690276 (-) True XLOC_006654
TCONS_00012849 other downstream 1817584 27651179 ~ 27663072 (-) False XLOC_006653
TCONS_00012879 other upstream 1056 29506660 ~ 29507601 (-) False XLOC_006678
TCONS_00012895 other upstream 1126501 30632105 ~ 30632219 (-) True XLOC_006693
TCONS_00012900 other upstream 1159215 30664819 ~ 30700459 (-) False XLOC_006695
TCONS_00012906 other upstream 1349715 30855319 ~ 30872439 (-) True XLOC_006699
TCONS_00012916 other upstream 1570229 31075833 ~ 31075947 (-) True XLOC_006705

Expression Profile

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