Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU12062 |
| length | 677 |
| lncRNA type | inter_gene |
| GC content | 0.29 |
| exon number | 1 |
| gene id | G10937 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000000 |
| NCBI id | null |
| chromosome length | 19091038 |
| location | 16901930 ~ 16902606 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU12096 | lncRNA | upstream | 164683 | 16737032 ~ 16737247 (+) | True | G10968 |
| TU12084 | lncRNA | upstream | 210380 | 16691262 ~ 16691550 (+) | True | G10956 |
| TU12023 | lncRNA | upstream | 274622 | 16626953 ~ 16627308 (+) | True | G10912 |
| TU12022 | lncRNA | upstream | 275438 | 16626008 ~ 16626492 (+) | True | G10911 |
| TU12014 | lncRNA | upstream | 317812 | 16581312 ~ 16584118 (+) | True | G10903 |
| TU12059 | lncRNA | downstream | 18686 | 16921292 ~ 16921561 (+) | True | G10934 |
| TU12147 | lncRNA | downstream | 94033 | 16996639 ~ 16996931 (+) | True | G11019 |
| TU12156 | lncRNA | downstream | 101796 | 17004402 ~ 17004656 (+) | True | G11028 |
| TU12167 | lncRNA | downstream | 112734 | 17015340 ~ 17015573 (+) | True | G11039 |
| TU12140 | lncRNA | downstream | 129970 | 17032576 ~ 17034843 (+) | True | G11012 |
| CI01000000_16894331_16900440.mRNA | mRNA | upstream | 1487 | 16894235 ~ 16900443 (+) | True | CI01000000_16894331_16900440 |
| CI01000000_16878307_16893681.mRNA | mRNA | upstream | 7869 | 16878211 ~ 16894061 (+) | True | CI01000000_16878307_16893681 |
| CI01000000_16871696_16877904.mRNA | mRNA | upstream | 23926 | 16871696 ~ 16878004 (+) | True | CI01000000_16871696_16877904 |
| CI01000000_16861880_16863508.mRNA | mRNA | upstream | 38153 | 16860443 ~ 16863777 (+) | True | CI01000000_16861880_16863508 |
| CI01000000_16835058_16848950.mRNA | mRNA | upstream | 52838 | 16834920 ~ 16849092 (+) | True | CI01000000_16835058_16848950 |
| CI01000000_16903722_16914680.mRNA | mRNA | downstream | 1116 | 16903722 ~ 16915079 (+) | True | CI01000000_16903722_16914680 |
| CI01000000_16919833_16920038.mRNA | mRNA | downstream | 17227 | 16919833 ~ 16920075 (+) | True | CI01000000_16919833_16920038 |
| CI01000000_16922072_16941848.mRNA | mRNA | downstream | 19426 | 16922032 ~ 16942264 (+) | True | CI01000000_16922072_16941848 |
| CI01000000_16971818_16978284.mRNA | mRNA | downstream | 68893 | 16971499 ~ 16978681 (+) | True | CI01000000_16971818_16978284 |
| CI01000000_17095875_17098978.mRNA | mRNA | downstream | 193198 | 17095804 ~ 17098978 (+) | True | CI01000000_17095875_17098978 |
| TU11228 | other | upstream | 971368 | 15930266 ~ 15930562 (+) | True | G10201 |
| TU10171 | other | upstream | 2666989 | 14227437 ~ 14234941 (+) | True | G9201 |
| TU8285 | other | upstream | 4722922 | 12178369 ~ 12179008 (+) | True | G7522 |
| TU8274 | other | upstream | 4764922 | 12136522 ~ 12137008 (+) | True | G7514 |
| TU7890 | other | upstream | 5656297 | 11244457 ~ 11245633 (+) | True | G7153 |
| TU12413 | other | downstream | 436548 | 17339154 ~ 17346200 (+) | False | CI01000000_17339270_17345013 |
| TU12414 | other | downstream | 436548 | 17339154 ~ 17346177 (+) | True | CI01000000_17339270_17345013 |
| TU12656 | other | downstream | 981347 | 17883953 ~ 17887462 (+) | False | G11465 |
| TU12729 | other | downstream | 1130133 | 18032739 ~ 18164112 (+) | True | G11521 |
| TU13048 | other | downstream | 1778261 | 18680867 ~ 18710278 (+) | False | G11801 |
