RNA id: TU12059


Basic Information

Item Value
RNA id TU12059
length 270
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G10934
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 16921292 ~ 16921561 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCAACAATCTCTTCCCTGTCATTATCCTTACGCAGGTGATGCAGTGAAGGCTTCCATGTTTACGACCGAAGGCCGGCTCAGTATTGGCCAAAGCTGATCACATGAGCAGCATGATGCATGCATGTGATGCTGATGCAGGAGCCGGCCAATAATGAGTCTGCGTTCTGACGCAGAACCTGGAAGTGCTGGACGTAAACAACGTATGAGAATGACACAGAAGAGAAGATATTGTTGAATGAAGTCGTTATTTTTGTTTTGTTTTTGCGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12062 lncRNA upstream 18686 16901930 ~ 16902606 (+) True G10937
TU12096 lncRNA upstream 184045 16737032 ~ 16737247 (+) True G10968
TU12084 lncRNA upstream 229742 16691262 ~ 16691550 (+) True G10956
TU12023 lncRNA upstream 293984 16626953 ~ 16627308 (+) True G10912
TU12022 lncRNA upstream 294800 16626008 ~ 16626492 (+) True G10911
TU12147 lncRNA downstream 75078 16996639 ~ 16996931 (+) True G11019
TU12156 lncRNA downstream 82841 17004402 ~ 17004656 (+) True G11028
TU12167 lncRNA downstream 93779 17015340 ~ 17015573 (+) True G11039
TU12140 lncRNA downstream 111015 17032576 ~ 17034843 (+) True G11012
TU12181 lncRNA downstream 134350 17055911 ~ 17056150 (+) True G11053
CI01000000_16919833_16920038.mRNA mRNA upstream 1217 16919833 ~ 16920075 (+) True CI01000000_16919833_16920038
CI01000000_16903722_16914680.mRNA mRNA upstream 6213 16903722 ~ 16915079 (+) True CI01000000_16903722_16914680
CI01000000_16894331_16900440.mRNA mRNA upstream 20849 16894235 ~ 16900443 (+) True CI01000000_16894331_16900440
CI01000000_16878307_16893681.mRNA mRNA upstream 27231 16878211 ~ 16894061 (+) True CI01000000_16878307_16893681
CI01000000_16871696_16877904.mRNA mRNA upstream 43288 16871696 ~ 16878004 (+) True CI01000000_16871696_16877904
CI01000000_16922072_16941848.mRNA mRNA downstream 471 16922032 ~ 16942264 (+) True CI01000000_16922072_16941848
CI01000000_16971818_16978284.mRNA mRNA downstream 49938 16971499 ~ 16978681 (+) True CI01000000_16971818_16978284
CI01000000_17095875_17098978.mRNA mRNA downstream 174243 17095804 ~ 17098978 (+) True CI01000000_17095875_17098978
CI01000000_17226578_17228246.mRNA mRNA downstream 305017 17226578 ~ 17228309 (+) True CI01000000_17226578_17228246
CI01000000_17228916_17261506.mRNA mRNA downstream 307184 17228745 ~ 17261638 (+) True CI01000000_17228916_17261506
TU11228 other upstream 990730 15930266 ~ 15930562 (+) True G10201
TU10171 other upstream 2686351 14227437 ~ 14234941 (+) True G9201
TU8285 other upstream 4742284 12178369 ~ 12179008 (+) True G7522
TU8274 other upstream 4784284 12136522 ~ 12137008 (+) True G7514
TU7890 other upstream 5675659 11244457 ~ 11245633 (+) True G7153
TU12413 other downstream 417593 17339154 ~ 17346200 (+) False CI01000000_17339270_17345013
TU12414 other downstream 417593 17339154 ~ 17346177 (+) True CI01000000_17339270_17345013
TU12656 other downstream 962392 17883953 ~ 17887462 (+) False G11465
TU12729 other downstream 1111178 18032739 ~ 18164112 (+) True G11521
TU13048 other downstream 1759306 18680867 ~ 18710278 (+) False G11801

Expression Profile