RNA id: TU12181


Basic Information

Item Value
RNA id TU12181
length 240
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G11053
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 17055911 ~ 17056150 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTAGGACCACCTACCTAATATTGTGTTGGTCCCCCTTTTGCTGCCAAAACAGGCCTGACCCGTCGAGGCATGGACTCCACTAGACCCCTGAAGGTGTGCTGTGGTATCTGCACCAAGATGTTAGCAGCAGATCCTTTAAGTCCTGTAAGCTGCGAGGTGGAGTCTCCATGGATCGGACTTGTTTGTTCAGCACATCCCACAGATGCTCGATTGGATTGAGATCTGGGGAATTTGGAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12140 lncRNA upstream 21068 17032576 ~ 17034843 (+) True G11012
TU12167 lncRNA upstream 40338 17015340 ~ 17015573 (+) True G11039
TU12156 lncRNA upstream 51255 17004402 ~ 17004656 (+) True G11028
TU12147 lncRNA upstream 58980 16996639 ~ 16996931 (+) True G11019
TU12059 lncRNA upstream 134350 16921292 ~ 16921561 (+) True G10934
TU12185 lncRNA downstream 6773 17062923 ~ 17063147 (+) True G11057
TU12477 lncRNA downstream 291135 17347285 ~ 17347552 (+) True G11309
TU12482 lncRNA downstream 359706 17415856 ~ 17416095 (+) True G11314
TU12406 lncRNA downstream 494558 17550708 ~ 17582913 (+) False G11251
TU12408 lncRNA downstream 494558 17550708 ~ 17582913 (+) False G11251
CI01000000_16971818_16978284.mRNA mRNA upstream 77230 16971499 ~ 16978681 (+) True CI01000000_16971818_16978284
CI01000000_16922072_16941848.mRNA mRNA upstream 113647 16922032 ~ 16942264 (+) True CI01000000_16922072_16941848
CI01000000_16919833_16920038.mRNA mRNA upstream 135836 16919833 ~ 16920075 (+) True CI01000000_16919833_16920038
CI01000000_16903722_16914680.mRNA mRNA upstream 140832 16903722 ~ 16915079 (+) True CI01000000_16903722_16914680
CI01000000_16894331_16900440.mRNA mRNA upstream 155468 16894235 ~ 16900443 (+) True CI01000000_16894331_16900440
CI01000000_17095875_17098978.mRNA mRNA downstream 39654 17095804 ~ 17098978 (+) True CI01000000_17095875_17098978
CI01000000_17226578_17228246.mRNA mRNA downstream 170428 17226578 ~ 17228309 (+) True CI01000000_17226578_17228246
CI01000000_17228916_17261506.mRNA mRNA downstream 172595 17228745 ~ 17261638 (+) True CI01000000_17228916_17261506
CI01000000_17267180_17298324.mRNA mRNA downstream 211030 17267180 ~ 17298324 (+) True CI01000000_17267180_17298324
CI01000000_17339270_17345013.mRNA mRNA downstream 283120 17339270 ~ 17345137 (+) False CI01000000_17339270_17345013
TU11228 other upstream 1125349 15930266 ~ 15930562 (+) True G10201
TU10171 other upstream 2820970 14227437 ~ 14234941 (+) True G9201
TU8285 other upstream 4876903 12178369 ~ 12179008 (+) True G7522
TU8274 other upstream 4918903 12136522 ~ 12137008 (+) True G7514
TU7890 other upstream 5810278 11244457 ~ 11245633 (+) True G7153
TU12413 other downstream 283004 17339154 ~ 17346200 (+) False CI01000000_17339270_17345013
TU12414 other downstream 283004 17339154 ~ 17346177 (+) True CI01000000_17339270_17345013
TU12656 other downstream 827803 17883953 ~ 17887462 (+) False G11465
TU12729 other downstream 976589 18032739 ~ 18164112 (+) True G11521
TU13048 other downstream 1624717 18680867 ~ 18710278 (+) False G11801

Expression Profile