RNA id: TCONS_00012879


Basic Information

Item Value
RNA id TCONS_00012879
length 426
RNA type processed_transcript
GC content 0.42
exon number 2
gene id XLOC_006678
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 29506613 ~ 29701941 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGACTGGCTCTGAGCACTACACGATGATGAAGGATTATTGTAGGTTAATCTGCTTGCCTGCCATCTGCCTGTTCCAAACAAATTAAACCTGAAAGCAAAGCCACACTCACAAATGTAGATGAAGctttGAACAATCACtatctgcagaagagcatttcttaACACACAACAATCAAACCttaaagcagatgagctacagcagcagcagaagaagagcaCACTGTTGATATTCCTGACATTAACAACAGccaactgaggctacagttcacacagaCTCAACAAATTTGGACAATCGAAAGCCAGCAAAGGTTGTGTGGTGTCTGCTGTGACGTTTGGATATCTGATTTAGAGTTTGACCTGAACAACATggaagcatgaatccatcctgcctcaTCATATCATTGGTTCAGGCTGCTGCAGTTTAAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000134676

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013484 lncRNA downstream 82521 29422694 ~ 29424139 (-) True XLOC_006675
TCONS_00013817 lncRNA downstream 276725 29224992 ~ 29229935 (-) True XLOC_006672
TCONS_00013816 lncRNA downstream 656766 28827293 ~ 28849894 (-) True XLOC_006671
TCONS_00013815 lncRNA downstream 658359 28827293 ~ 28848301 (-) False XLOC_006671
TCONS_00013814 lncRNA downstream 760083 28743798 ~ 28746577 (-) True XLOC_006670
TCONS_00013818 lncRNA upstream 80810 29588411 ~ 29701910 (-) False XLOC_006678
TCONS_00013819 lncRNA upstream 80810 29588411 ~ 29701929 (-) False XLOC_006678
TCONS_00013820 lncRNA upstream 94559 29602160 ~ 29701910 (-) False XLOC_006678
TCONS_00013821 lncRNA upstream 102495 29610096 ~ 29684966 (-) False XLOC_006678
TCONS_00013822 lncRNA upstream 102495 29610096 ~ 29701910 (-) False XLOC_006678
TCONS_00012877 mRNA downstream 714 29480010 ~ 29505946 (-) False XLOC_006677
TCONS_00012878 mRNA downstream 1056 29480656 ~ 29505604 (-) True XLOC_006677
TCONS_00012876 mRNA downstream 50801 29446226 ~ 29455859 (-) True XLOC_006676
TCONS_00012875 mRNA downstream 82206 29422049 ~ 29424454 (-) False XLOC_006675
TCONS_00012874 mRNA downstream 85329 29409359 ~ 29421331 (-) True XLOC_006674
TCONS_00012882 mRNA upstream 445032 29952633 ~ 29980215 (-) False XLOC_006681
TCONS_00012884 mRNA upstream 483489 29991090 ~ 30006260 (-) True XLOC_006683
TCONS_00012885 mRNA upstream 499953 30007554 ~ 30028103 (-) False XLOC_006684
TCONS_00012886 mRNA upstream 502016 30009617 ~ 30027730 (-) True XLOC_006684
TCONS_00012887 mRNA upstream 525435 30033036 ~ 30034754 (-) True XLOC_006685
TCONS_00012862 other downstream 1089502 28285862 ~ 28417158 (-) True XLOC_006661
TCONS_00012861 other downstream 1211246 28276898 ~ 28295414 (-) False XLOC_006661
TCONS_00012858 other downstream 1327110 28179434 ~ 28179550 (-) True XLOC_006658
TCONS_00012853 other downstream 1816384 27690160 ~ 27690276 (-) True XLOC_006654
TCONS_00012849 other downstream 1843588 27651179 ~ 27663072 (-) False XLOC_006653
TCONS_00012895 other upstream 1124504 30632105 ~ 30632219 (-) True XLOC_006693
TCONS_00012900 other upstream 1157218 30664819 ~ 30700459 (-) False XLOC_006695
TCONS_00012906 other upstream 1347718 30855319 ~ 30872439 (-) True XLOC_006699
TCONS_00012916 other upstream 1568232 31075833 ~ 31075947 (-) True XLOC_006705
TCONS_00012917 other upstream 1618848 31126449 ~ 31127046 (-) True XLOC_006708

Expression Profile

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