Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU12405 |
| length | 6721 |
| lncRNA type | antisense_over |
| GC content | 0.44 |
| exon number | 2 |
| gene id | G11251 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000000 |
| NCBI id | null |
| chromosome length | 19091038 |
| location | 17550708 ~ 17582913 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU12482 | lncRNA | upstream | 157989 | 17415856 ~ 17416095 (+) | True | G11314 |
| TU12477 | lncRNA | upstream | 226532 | 17347285 ~ 17347552 (+) | True | G11309 |
| TU12185 | lncRNA | upstream | 510937 | 17062923 ~ 17063147 (+) | True | G11057 |
| TU12181 | lncRNA | upstream | 517934 | 17055911 ~ 17056150 (+) | True | G11053 |
| TU12140 | lncRNA | upstream | 539241 | 17032576 ~ 17034843 (+) | True | G11012 |
| TU12597 | lncRNA | downstream | 121422 | 17704335 ~ 17704550 (+) | True | G11413 |
| TU12608 | lncRNA | downstream | 144965 | 17727878 ~ 17729245 (+) | True | G11423 |
| TU12620 | lncRNA | downstream | 171677 | 17754590 ~ 17759604 (+) | True | G11435 |
| TU12626 | lncRNA | downstream | 187939 | 17770852 ~ 17771247 (+) | True | G11441 |
| TU12627 | lncRNA | downstream | 189540 | 17772453 ~ 17772804 (+) | True | G11442 |
| CI01000000_17540827_17545953.mRNA | mRNA | upstream | 27939 | 17540827 ~ 17546145 (+) | True | CI01000000_17540827_17545953 |
| CI01000000_17507574_17510080.mRNA | mRNA | upstream | 63189 | 17507574 ~ 17510895 (+) | True | CI01000000_17507574_17510080 |
| CI01000000_17501554_17504867.mRNA | mRNA | upstream | 69180 | 17501554 ~ 17504904 (+) | True | CI01000000_17501554_17504867 |
| CI01000000_17478377_17481058.mRNA | mRNA | upstream | 91913 | 17478377 ~ 17482171 (+) | True | CI01000000_17478377_17481058 |
| CI01000000_17388536_17403918.mRNA | mRNA | upstream | 168957 | 17387718 ~ 17405127 (+) | True | CI01000000_17388536_17403918 |
| CI01000000_17642401_17643835.mRNA | mRNA | downstream | 59286 | 17642199 ~ 17643839 (+) | True | CI01000000_17642401_17643835 |
| CI01000000_17644414_17655141.mRNA | mRNA | downstream | 61440 | 17644353 ~ 17655748 (+) | True | CI01000000_17644414_17655141 |
| CI01000000_17672091_17673742.mRNA | mRNA | downstream | 88759 | 17671672 ~ 17675142 (+) | True | CI01000000_17672091_17673742 |
| CI01000000_17729584_17730495.mRNA | mRNA | downstream | 146671 | 17729584 ~ 17730599 (+) | True | CI01000000_17729584_17730495 |
| CI01000000_17831876_17854247.mRNA | mRNA | downstream | 247847 | 17830760 ~ 17854433 (+) | True | CI01000000_17831876_17854247 |
| TU12413 | other | upstream | 227884 | 17339154 ~ 17346200 (+) | False | CI01000000_17339270_17345013 |
| TU12414 | other | upstream | 227907 | 17339154 ~ 17346177 (+) | True | CI01000000_17339270_17345013 |
| TU11228 | other | upstream | 1643522 | 15930266 ~ 15930562 (+) | True | G10201 |
| TU10171 | other | upstream | 3339143 | 14227437 ~ 14234941 (+) | True | G9201 |
| TU8285 | other | upstream | 5395076 | 12178369 ~ 12179008 (+) | True | G7522 |
| TU12656 | other | downstream | 301040 | 17883953 ~ 17887462 (+) | False | G11465 |
| TU12729 | other | downstream | 449826 | 18032739 ~ 18164112 (+) | True | G11521 |
| TU13048 | other | downstream | 1097954 | 18680867 ~ 18710278 (+) | False | G11801 |
