RNA id: TCONS_00013820


Basic Information

Item Value
RNA id TCONS_00013820
length 717
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id XLOC_006678
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 29506613 ~ 29701941 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCTGCAATCaatcgtctgatctcggagcgctttcgcggtactttgatgccacgtgtgacagtcacgtggcgtccgCGCGCGGCGCGCAGCGTCAATCCGGACATTTCTAACCTCAGACgtatttcgatcgatctgcgcacgTTCAACTTGACAATGTTCAACATGTGACTGAAACATTTGCCTTTTATCAGTTGATTTCCTAAAACCACTTCATCTCgcctgtgttgttttatttttgagtcTTTAGACTATTGTCAGTGACTCTCTCCTttgggattgttttttttttgcacatctgAATGGATTGTTTTGGAGAAGTGAGCGAGTCTGACTGTTGTGAGAGGGGGATGATCACACCGCGATAATTCGACTGACTAAGAAGTTCCTGCTTCAATGACTTTGTCCCACGGAGGGATGTGACTTCCAGACCCCTCAGATTGATTGTTTACTTGGAAGCTGAGGGAGGAGAGCATCTAGTTGTTTCCCAAGTATCTGTGGAACTGGAGTTAGCTGGACTGTAACAATGGACTTTTCTTCTTTTACCTGAAGCGGCGTTCAAAAGCACATGTTGTTCTTTATGCTTGAGcgaTTGGCCATTAGTCTCTGCCAATATGTTCAGCAAAACTCTCTTCGAAATGTAATGAAGACGATTGGCTGGCCTTCAGGGACAAATATGTTCCGTTTCCAAACTTCAGGTAGGCACAGGCTATAGGATT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013484 lncRNA downstream 178021 29422694 ~ 29424139 (-) True XLOC_006675
TCONS_00013817 lncRNA downstream 372225 29224992 ~ 29229935 (-) True XLOC_006672
TCONS_00013816 lncRNA downstream 752266 28827293 ~ 28849894 (-) True XLOC_006671
TCONS_00013815 lncRNA downstream 753859 28827293 ~ 28848301 (-) False XLOC_006671
TCONS_00013814 lncRNA downstream 855583 28743798 ~ 28746577 (-) True XLOC_006670
TCONS_00013825 lncRNA upstream 7435 29709345 ~ 29744806 (-) False XLOC_006679
TCONS_00013826 lncRNA upstream 31600 29733510 ~ 29763795 (-) False XLOC_006679
TCONS_00013485 lncRNA upstream 33125 29735035 ~ 29739371 (-) False XLOC_006679
TCONS_00013828 lncRNA upstream 33125 29735035 ~ 29744806 (-) False XLOC_006679
TCONS_00013827 lncRNA upstream 33125 29735035 ~ 29744806 (-) False XLOC_006679
TCONS_00012877 mRNA downstream 96214 29480010 ~ 29505946 (-) False XLOC_006677
TCONS_00012878 mRNA downstream 96556 29480656 ~ 29505604 (-) True XLOC_006677
TCONS_00012876 mRNA downstream 146301 29446226 ~ 29455859 (-) True XLOC_006676
TCONS_00012875 mRNA downstream 177706 29422049 ~ 29424454 (-) False XLOC_006675
TCONS_00012874 mRNA downstream 180829 29409359 ~ 29421331 (-) True XLOC_006674
TCONS_00012882 mRNA upstream 250723 29952633 ~ 29980215 (-) False XLOC_006681
TCONS_00012884 mRNA upstream 289180 29991090 ~ 30006260 (-) True XLOC_006683
TCONS_00012885 mRNA upstream 305644 30007554 ~ 30028103 (-) False XLOC_006684
TCONS_00012886 mRNA upstream 307707 30009617 ~ 30027730 (-) True XLOC_006684
TCONS_00012887 mRNA upstream 331126 30033036 ~ 30034754 (-) True XLOC_006685
TCONS_00012879 other downstream 94559 29506660 ~ 29507601 (-) False XLOC_006678
TCONS_00012862 other downstream 1185002 28285862 ~ 28417158 (-) True XLOC_006661
TCONS_00012861 other downstream 1306746 28276898 ~ 28295414 (-) False XLOC_006661
TCONS_00012858 other downstream 1422610 28179434 ~ 28179550 (-) True XLOC_006658
TCONS_00012853 other downstream 1911884 27690160 ~ 27690276 (-) True XLOC_006654
TCONS_00012895 other upstream 930195 30632105 ~ 30632219 (-) True XLOC_006693
TCONS_00012900 other upstream 962909 30664819 ~ 30700459 (-) False XLOC_006695
TCONS_00012906 other upstream 1153409 30855319 ~ 30872439 (-) True XLOC_006699
TCONS_00012916 other upstream 1373923 31075833 ~ 31075947 (-) True XLOC_006705
TCONS_00012917 other upstream 1424539 31126449 ~ 31127046 (-) True XLOC_006708

Expression Profile

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