RNA id: TU13495


Basic Information

Item Value
RNA id TU13495
length 964
lncRNA type sense_over
GC content 0.31
exon number 2
gene id G12192
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 17998935 ~ 18048557 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTAGGGCCTTTTAACTAGTTGCTTATTAGCATGCATATTACTAGAATATTGGCTGTTTATTAATACTTATTAAGCACATATTAATGCCTTATTCTGCATGACCTTATTCTACATTCTTAATCCTACCCAATACCTAAACTTAACAACTACCTTACTAACTATTAATAATCAGTAAATTAGGAGTTTATTGAGGGAAAAGTCATAGCTAATAGTGAATACATGTTCCCTATCCTAAAGTGTTACCACCTTTTTTATTTCCTCAAATTACTTTTATTTTATTCTGTTCTTTTGAACTTCATATTCATCAGAATCACAGTTTCCACATAAATATTAAGCAGCACAACTGTTTTCAACATTGATAATAATAAGCAAATAAGCATATTATTATGATTTCTGAAGGATCATGTGACACTGAAGACTGGAGTAAATACAGCTTTGATCACAGGAATAAATTACATTCTAAAATGCATTTAAATAGAAAACAGTTCTTTTAAATTGTAATAATATTTCACGATATTACTGTTTTTACTGTATTTTTGATCAAATAAATGCAGCATAAGAGACTTCTTTCAAAAACATGAAAAAAGTTAACTTTTTTAGCAGTAGTTTATGGATCTGTTGCAATGACAAAACTATGGCTATTATCAGGTGTGGGCGGGTTTTTAAAGGGTTAGTTCACCCAAAAATGAAAATTCTGTCATTAATTACTCACCCTCATGTCGTTCCACACCCGCAAGACCTTTGTTCATCTTCAGAACACAAATTAAGATATTTTTGATAAAATCCGATGGCTTAGTGAGGCCTCCATTGACACTTTCAATGCCCAGAAAGCTACTAAAGACATATTTAAAACAGTTCATGTGACTACAGTGGTTCAACCTTAATGTTATGAAGCGACGAGAATACTTTTTGTGCGCCAAAAAAACAAAATAACGACTTTATTCAACAATATCTAGTGATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13542 lncRNA downstream 139538 17859160 ~ 17859397 (-) True G12235
TU13541 lncRNA downstream 140002 17858312 ~ 17858933 (-) False G12234
TU13538 lncRNA downstream 140244 17858358 ~ 17858691 (-) True G12234
TU13500 lncRNA downstream 202479 17796205 ~ 17796456 (-) True G12197
TU13502 lncRNA downstream 224161 17774536 ~ 17774774 (-) True G12199
TU13496 lncRNA upstream 151334 18199891 ~ 18205147 (-) True G12193
TU13642 lncRNA upstream 391940 18440497 ~ 18447573 (-) True G12329
TU13694 lncRNA upstream 511265 18559822 ~ 18560075 (-) True G12378
TU13590 lncRNA upstream 734698 18785488 ~ 18788006 (-) True G12279
TU13724 lncRNA upstream 759267 18807824 ~ 18811485 (-) True G12397
CI01000000_17943046_17977294.mRNA mRNA downstream 21641 17942947 ~ 17977294 (-) True CI01000000_17943046_17977294
CI01000000_17908883_17915640.mRNA mRNA downstream 83295 17908883 ~ 17915640 (-) True CI01000000_17908883_17915640
CI01000000_17884239_17897080.mRNA mRNA downstream 101855 17884239 ~ 17897080 (-) True CI01000000_17884239_17897080
CI01000000_17875886_17878748.mRNA mRNA downstream 120187 17875708 ~ 17878748 (-) True CI01000000_17875886_17878748
CI01000000_17867711_17872984.mRNA mRNA downstream 125951 17867583 ~ 17872984 (-) True CI01000000_17867711_17872984
CI01000000_18091524_18099742.mRNA mRNA upstream 42942 18091499 ~ 18100084 (-) True CI01000000_18091524_18099742
CI01000000_18165645_18188731.mRNA mRNA upstream 116530 18165087 ~ 18190070 (-) True CI01000000_18165645_18188731
CI01000000_18258072_18259037.mRNA mRNA upstream 209456 18258013 ~ 18259224 (-) False CI01000000_18258072_18259037
CI01000000_18409095_18422809.mRNA mRNA upstream 359077 18407634 ~ 18422852 (-) True CI01000000_18409095_18422809
CI01000000_18470390_18486185.mRNA mRNA upstream 420914 18469471 ~ 18486185 (-) True CI01000000_18470390_18486185
TU12242 other downstream 1330988 16667118 ~ 16667947 (-) True G11107
TU11724 other downstream 1634388 16362508 ~ 16364547 (-) False G10645
TU11754 other downstream 1767809 16226287 ~ 16231126 (-) True G10672
TU10602 other downstream 3500341 14483120 ~ 14498594 (-) True G9601
TU10603 other downstream 3652401 14341002 ~ 14346534 (-) True G9602

Expression Profile