RNA id: TU13744


Basic Information

Item Value
RNA id TU13744
length 528
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G12414
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 18864331 ~ 18864858 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TACACTATATTGCCAAAAGTTTTGGGACGCCTGCCTTTACGTGCACATGAACTTTAATGACATCCCATTCTTAATCCGTAGGGTTTAATATGGAGTTGGCCCACCCTTTGCAGCTATAACAGCTTCAACTTTTCTGGGAAGGCTTTCCACAAGGTTTAGGAGTGTGTTTATGGGAATTTTTGACCATTCTTCTAGAAGCGCATTTGTGAGGTCAGGCAGTGATGTTGGCGAGAAGTCTCCGCTCTAATTCATCCCAAAGGTGGTTGAGGTCAGGACTCTGTGCAGGCCAGTCAAGTTCCTCCACACCAAACTCGCTCATCCATGTCTTTATGGACCTTGCTTTGTGCACTAGTGCGCAGTCATGTTGGAACGGGAAGGGGCCATCCCCAAACTGTTCCCACAAAGTTGGGAGCATGAAATTGTCCAAAATGTCTTGGTATGCTGAAGCATTAAGAGTTCCTTTCACTGGAACTAAGGGTCCAAGCCCAACCCCTGAAAAACAACCCCACACCATAATCCCCCTCCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13736 lncRNA downstream 21274 18842822 ~ 18843057 (-) True G12406
TU13724 lncRNA downstream 52846 18807824 ~ 18811485 (-) True G12397
TU13590 lncRNA downstream 76325 18785488 ~ 18788006 (-) True G12279
TU13694 lncRNA downstream 304256 18559822 ~ 18560075 (-) True G12378
TU13642 lncRNA downstream 416758 18440497 ~ 18447573 (-) True G12329
TU13746 lncRNA upstream 2993 18867851 ~ 18895992 (-) True G12415
TU13749 lncRNA upstream 4836 18869694 ~ 18871234 (-) True G12417
TU13731 lncRNA upstream 20754 18885612 ~ 18908777 (-) False G12401
TU13727 lncRNA upstream 36087 18900945 ~ 18901762 (-) False G12400
TU13728 lncRNA upstream 36087 18900945 ~ 18903059 (-) True G12400
CI01000000_18815522_18834911.mRNA mRNA downstream 29420 18815473 ~ 18834911 (-) True CI01000000_18815522_18834911
CI01000000_18789985_18793339.mRNA mRNA downstream 70992 18789985 ~ 18793339 (-) True CI01000000_18789985_18793339
CI01000000_18779242_18784513.mRNA mRNA downstream 79818 18778960 ~ 18784513 (-) False CI01000000_18779242_18784513
CI01000000_18721338_18772372.mRNA mRNA downstream 91659 18721275 ~ 18772672 (-) True CI01000000_18721338_18772372
CI01000000_18665046_18710097.mRNA mRNA downstream 154220 18664585 ~ 18710111 (-) True CI01000000_18665046_18710097
CI01000000_18948340_18951635.mRNA mRNA upstream 83269 18948127 ~ 18951954 (-) True CI01000000_18948340_18951635
CI01000000_19057376_19068807.mRNA mRNA upstream 192433 19057291 ~ 19068807 (-) True CI01000000_19057376_19068807
TU12242 other downstream 2196384 16667118 ~ 16667947 (-) True G11107
TU11724 other downstream 2499784 16362508 ~ 16364547 (-) False G10645
TU11754 other downstream 2633205 16226287 ~ 16231126 (-) True G10672
TU10602 other downstream 4365737 14483120 ~ 14498594 (-) True G9601
TU10603 other downstream 4517797 14341002 ~ 14346534 (-) True G9602

Expression Profile