RNA id: CI01000001_00238241_00249437.mRNA



Basic Information


Item Value
RNA id CI01000001_00238241_00249437.mRNA
length 1491
RNA type mRNA
GC content 0.52
exon number 10
gene id CI01000001_00238241_00249437
representative False

Chromosome Information


Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 238241 ~ 249437 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGTTTAGACGATGCACTGAATTTTCTAAAAAGAAAAAGGATAAAAGGATGGAGGCCTCGTGTCTGGAACTAGCTCTGGAAGGTGAGCGTCTGTGTAAAGTGGGAGATTACCGTGCGGGCGTCTCCTTTTTTGAGTCGGCCATCCAGGTGGGCACAGAAGACCTGCAGATTTTGAGCGCCATCTACAGTCAGCTGGGAAACGCCTACTTCCACCTGCATGACTACAACAAGGCTCTAGAATATCATCGGCATGACCTGACGCTCACTAGAACTATCAGAGATCAGCTAGGAGAAGCTAAAGCCAGTGGGAACCTTGGAAACACGTTGAAAGTTTTGGGACGCTATGATGAAGCAGCAGTTTGTTGCCAAAGACATCTGGATATTTCCAGGATGCTCCATGATAAGGTGAGACGGACGCTGCAGTTGGCGCGGCAGTTGAAGGACAGGGCCGTGGAAGCTCAGGCCTGCTACAGTCTGGGCAACACCTACACGCTACTGCAGGACTATGAGAGAGCCATAGACTATCACCTCAAACATCTCATCATAGCGCAGGACCTTAAGGACAGCACTTCCAGTAATGTTTTTTCCTTCCTGTATGTGTGCGCTCCTCAGATTGGAGACCGCAGTGGGGAGCTGACAGCCAGAATGAACGTATCTGATCTGCAGTTAGTTTTGGGTCTGAAGCAAAACAATTCAAACCCTAACAGCCCTGCCTTCATCGAGAGTCCGTCCGCTGACAGCAGTCTGCCTGATGGAAGATCCAGAGGAAGCCGTAGACACAGCATGGAGAACATGGAGCTCATGAAACTGACCTCTGACAAAAATGTGGGGCAGGCCTGTGAGGAGACTACAACACCTCAGCAAGTCAAATCACCAACCAAAACTTCCATAGCCAAGACATCTTCCAAAATTTCCTTCATCAATCGCTTCAGGAGCAAAAAACACAGGTTGAATGGTTCAAACTCCAGTCCACCAGCTGAAAATAACAGCAGTAGCAGTAGCCCAACTTCAGCCCCTCCAGACATACAGCACGCTCCAGACACTCTGGGTGAAGACGGCTTTTTTGACCTTCTAAGCCGCTTCCAAGGCAGCCGTATGGATGATCAAAGGTGCTCATTAGAGGACGGCATAAGCCGTGTTCCCGCCCCTTCCTCTCCCCGTGAAACCCCACCTGTAGCCTTGAGGAAACACCTGCTGGCCAGCTCGCAGAGCCGTCGGCTGGACGAGCAGCGGGCCAGTGTGAGCAGTCTTCCGGGTTTCCGGCTGGACCAGCGCCACAGCCAGGATGTTCTCAGCAAACTCATGGCCACGGCCGATAGCAAAGAACCGGATGAAGACTTCTTCGACATGCTGATTAAGTGCCAGGGATCCAGACTGGATGATCAGAGGTGTGCTCCTCCTCCACCCCCCACCAGAGGCCCCACAGTCCCAGACGACGACTTCTTCAGCCTCATCGTTCGCTCCCAGGCCAAACGAATAGATGAGCAGCGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU14311 lncRNA downstream 25995 211309 ~ 212246 (-) True G12873
TU14318 lncRNA downstream 28883 209149 ~ 209358 (-) True G12880
TU14316 lncRNA downstream 34535 203492 ~ 203706 (-) True G12878
TU14315 lncRNA downstream 35024 202998 ~ 203217 (-) True G12877
TU14305 lncRNA downstream 53184 184856 ~ 185057 (-) True G12868
TU14361 lncRNA upstream 28607 278044 ~ 278289 (-) True G12920
TU14362 lncRNA upstream 33118 282555 ~ 282782 (-) True G12921
TU14374 lncRNA upstream 86288 335725 ~ 336033 (-) True G12933
TU14335 lncRNA upstream 109434 358871 ~ 359739 (-) True G12896
TU14386 lncRNA upstream 155894 405331 ~ 406159 (-) True G12945
CI01000001_00222940_00227735.mRNA mRNA downstream 10234 222800 ~ 228007 (-) True CI01000001_00222940_00227735
CI01000001_00218182_00220017.mRNA mRNA downstream 18125 217657 ~ 220116 (-) True CI01000001_00218182_00220017
CI01000001_00192545_00195828.mRNA mRNA downstream 41410 191931 ~ 196831 (-) True CI01000001_00192545_00195828
CI01000001_00124107_00131285.mRNA mRNA downstream 106861 123059 ~ 131380 (-) False CI01000001_00124107_00131285
CI01000001_00113458_00118362.mRNA mRNA downstream 119794 111929 ~ 118447 (-) True CI01000001_00113458_00118362
CI01000001_00305883_00333574.mRNA mRNA upstream 56054 305491 ~ 333798 (-) True CI01000001_00305883_00333574
CI01000001_00362143_00378213.mRNA mRNA upstream 112177 361614 ~ 378213 (-) False CI01000001_00362143_00378213
CI01000001_00445369_00466166.mRNA mRNA upstream 195803 445240 ~ 466897 (-) True CI01000001_00445369_00466166
CI01000001_00493196_00498517.mRNA mRNA upstream 243328 492765 ~ 498517 (-) True CI01000001_00493196_00498517
CI01000001_00500347_00500698.mRNA mRNA upstream 250646 500083 ~ 500698 (-) True CI01000001_00500347_00500698
TU14263 other downstream 103316 129502 ~ 134925 (-) True G12848
TU14286 other downstream 112784 122814 ~ 125457 (-) False CI01000001_00124107_00131285
TU14337 other upstream 117805 367242 ~ 397133 (-) True G12898
TU15779 other upstream 1514232 1763669 ~ 1767458 (-) False G14104
TU15917 other upstream 1744773 1994210 ~ 1994898 (-) True G14219
TU15926 other upstream 1806537 2055974 ~ 2056478 (-) True G14228
TU15886 other upstream 2009952 2262344 ~ 2297212 (-) True G14188

Expression Profile