RNA id: TU14730


Basic Information

Item Value
RNA id TU14730
length 594
lncRNA type sense_over
GC content 0.32
exon number 1
gene id CI01000001_00872245_00878013
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 870806 ~ 878013 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTGAACCACTGTAGTCACATGGACTATTTTATTTTATTGATGTCTTTAGTACTTTTCTGGACCTTGAAAGTGGTAATTACATTGCTGCCTATTTCATCAAAAATATCTTTTAATTTGTTTTTCTGAAGATGAACGAAGGTCTTACAGATTTGGAACGACATGAGGGTGAGTAATTAATGACAGAATTTTCATTTTTGGGTGAACTAATCCTTAAATGTGCAAGTTTGTTGGTAACGACAGCAAAATACTTCATCACTACTTTAATTAACATTGAAATACAAAGAAAGTATATCAGGTAACACCAGTAAATATGCTGTAGAGATTAATAGTTAACTTTAAATGTTCAAACCACTGCCATTTTGGTGGCAGAAATCAGCGCTGTCATAAAATTAAGAGTTCGACAAAGACAAATTTTACAAGTTGAAAATGTGTTATGGATATTCCAATAATTTTGACATGACATAATATATAGGGGTTGCCATGTTGGATCAGGGAGTCATAGTTTCATATTCAAGTTATGTATCGAATCAAATGTGGACAAATTATGTTTTTCCCCTGTTCTACAGTAAAATAAACATTCTACTTTTTCAGTC

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14747 lncRNA downstream 10334 860239 ~ 860528 (-) True G13236
TU14450 lncRNA downstream 41244 829368 ~ 829618 (-) True G13009
TU14440 lncRNA downstream 50274 820389 ~ 820588 (-) True G12999
TU14438 lncRNA downstream 52735 817787 ~ 818127 (-) True G12997
TU14346 lncRNA downstream 159546 614220 ~ 711316 (-) True G12907
TU14773 lncRNA upstream 44793 916248 ~ 916447 (-) True G13262
TU14775 lncRNA upstream 47784 919239 ~ 919520 (-) True G13264
TU14776 lncRNA upstream 49460 920915 ~ 921145 (-) True G13265
TU14777 lncRNA upstream 49808 921263 ~ 921485 (-) True G13266
TU14797 lncRNA upstream 81290 952745 ~ 952993 (-) True G13286
CI01000001_00839822_00841040.mRNA mRNA downstream 28441 839630 ~ 842421 (-) True CI01000001_00839822_00841040
CI01000001_00808831_00814314.mRNA mRNA downstream 56221 807938 ~ 814641 (-) True CI01000001_00808831_00814314
CI01000001_00754687_00806154.mRNA mRNA downstream 64320 754565 ~ 806542 (-) True CI01000001_00754687_00806154
CI01000001_00716122_00741331.mRNA mRNA downstream 129242 716103 ~ 741620 (-) True CI01000001_00716122_00741331
CI01000001_00636063_00642086.mRNA mRNA downstream 228483 636042 ~ 642379 (-) True CI01000001_00636063_00642086
CI01000001_00925612_00928679.mRNA mRNA upstream 53985 925440 ~ 928949 (-) True CI01000001_00925612_00928679
CI01000001_01030701_01030988.mRNA mRNA upstream 158799 1030254 ~ 1031164 (-) True CI01000001_01030701_01030988
CI01000001_01033836_01034518.mRNA mRNA upstream 161881 1033336 ~ 1034675 (-) False CI01000001_01033836_01034518
CI01000001_01056812_01066005.mRNA mRNA upstream 184997 1056452 ~ 1066123 (-) True CI01000001_01056812_01066005
CI01000001_01068423_01079855.mRNA mRNA upstream 196185 1067640 ~ 1080617 (-) True CI01000001_01068423_01079855
TU14337 other downstream 473729 367242 ~ 397133 (-) True G12898
TU14333 other downstream 613345 257372 ~ 257517 (-) True G12894
TU14263 other downstream 735937 129502 ~ 134925 (-) True G12848
TU14286 other downstream 745405 122814 ~ 125457 (-) False CI01000001_00124107_00131285
TU15779 other upstream 892214 1763669 ~ 1767458 (-) False G14104
TU15917 other upstream 1122755 1994210 ~ 1994898 (-) True G14219
TU15926 other upstream 1184519 2055974 ~ 2056478 (-) True G14228
TU15886 other upstream 1387934 2262344 ~ 2297212 (-) True G14188
TU17347 other upstream 3520859 4392314 ~ 4399515 (-) True CI01000001_04395469_04399381

Expression Profile