RNA id: CI01000001_00925612_00928679.mRNA


Basic Information

Item Value
RNA id CI01000001_00925612_00928679.mRNA
length 937
RNA type mRNA
GC content 0.46
exon number 2
gene id CI01000001_00925612_00928679
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 925440 ~ 928949 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTGCAAGATTAGGGATTTATGAAGACGGAGTTAAACGCAAGGGTCAGTTTTGTCTGGGATTTTGCCCGTTCAACATGCATCTTCTCTAATGCAGTCAGACGTCTCACTAAAAGGAGAGATTGTGCTCCGAAGCAACCATTTCTCTCTCTTTCTGTATCTAGGAGCCCAAGACACCGATACAGAACTGAGTGACGCTTCCTTAAAGTGAGCCAGTGAAGAGGATCGGATGAAGTGAGTGAGTGCGTTAAATAGGGCTTGGACACCTCAGCATGATAATTTTCTATCAGTGCCGCCCAGAGGAATCTGACAGGCCTTATGCTGAGTCGGCAGTCTGTTGGAGACTGGCAGGCGTGGCCTTTTATCCTTCCACATGTTTCACAGCAATTGGACAATCAGCCACTGCAGTGAAAATCCATAGTATTGATCGGCCCTGTATCTTCTCTATAATTCTCCAGCAGGAAATCCCTGATGACAAATTATATCTGCACCAGTTTTTGATTGGTGCTTTGATGCCTCTCATTCACGCTTTTTGCATGGGACTCACACATAGCCTGACTACAACCGCAAGGCTCTCGAGCACGCCGCTTTGCATCTCTTGTATTCCCAGGCTTTGTCTTGCTCTGGGTATATCGCGGCGTGCGTGTCAGCAGCTGTGTCAGTGTCGCACCTGGTGGTGGATTTTGCATATGCAATCACAGCACAAGTTAACCCCAACATTACAGAGTACAGATGTTGCAATCCCCCGTGCTGCTTTATCAGAGTGAATATCAGCCCGGAACGGCAGCAGAGCATGAAACGCTCTAATTTTAGGACAGATTTCCTCTCCTGAGACATAATCTAATTAATGGAATAACCAATCAATATGGTGCATTTCCATTTTTAGCTGTAATTTGTGGGCTGTGTACGGGATATCTGCTCTGCTGTTAAAATAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14777 lncRNA downstream 3955 921263 ~ 921485 (-) True G13266
TU14776 lncRNA downstream 4295 920915 ~ 921145 (-) True G13265
TU14775 lncRNA downstream 5920 919239 ~ 919520 (-) True G13264
TU14773 lncRNA downstream 8993 916248 ~ 916447 (-) True G13262
TU14730 lncRNA downstream 53985 870862 ~ 871455 (-) True CI01000001_00872245_00878013
TU14797 lncRNA upstream 23796 952745 ~ 952993 (-) True G13286
TU14804 lncRNA upstream 53974 982923 ~ 983336 (-) True G13293
TU14842 lncRNA upstream 103335 1032284 ~ 1033040 (-) True G13325
TU14847 lncRNA upstream 114712 1043661 ~ 1045223 (-) True G13330
TU14894 lncRNA upstream 157854 1086803 ~ 1115769 (-) True G13370
CI01000001_00872245_00878013.mRNA mRNA downstream 47427 870880 ~ 878013 (-) False CI01000001_00872245_00878013
CI01000001_00839822_00841040.mRNA mRNA downstream 83019 839630 ~ 842421 (-) True CI01000001_00839822_00841040
CI01000001_00808831_00814314.mRNA mRNA downstream 110799 807938 ~ 814641 (-) True CI01000001_00808831_00814314
CI01000001_00754687_00806154.mRNA mRNA downstream 118898 754565 ~ 806542 (-) True CI01000001_00754687_00806154
CI01000001_00716122_00741331.mRNA mRNA downstream 183820 716103 ~ 741620 (-) True CI01000001_00716122_00741331
CI01000001_01030701_01030988.mRNA mRNA upstream 101305 1030254 ~ 1031164 (-) True CI01000001_01030701_01030988
CI01000001_01033836_01034518.mRNA mRNA upstream 104387 1033336 ~ 1034675 (-) False CI01000001_01033836_01034518
CI01000001_01056812_01066005.mRNA mRNA upstream 127503 1056452 ~ 1066123 (-) True CI01000001_01056812_01066005
CI01000001_01068423_01079855.mRNA mRNA upstream 138691 1067640 ~ 1080617 (-) True CI01000001_01068423_01079855
CI01000001_01158947_01164142.mRNA mRNA upstream 229449 1158398 ~ 1165151 (-) True CI01000001_01158947_01164142
TU14337 other downstream 528307 367242 ~ 397133 (-) True G12898
TU14333 other downstream 667923 257372 ~ 257517 (-) True G12894
TU14263 other downstream 790515 129502 ~ 134925 (-) True G12848
TU14286 other downstream 799983 122814 ~ 125457 (-) False CI01000001_00124107_00131285
TU15779 other upstream 834720 1763669 ~ 1767458 (-) False G14104
TU15917 other upstream 1065261 1994210 ~ 1994898 (-) True G14219
TU15926 other upstream 1127025 2055974 ~ 2056478 (-) True G14228
TU15886 other upstream 1330440 2262344 ~ 2297212 (-) True G14188
TU17347 other upstream 3463365 4392314 ~ 4399515 (-) True CI01000001_04395469_04399381

Expression Profile