RNA id: TU14842



Basic Information


Item Value
RNA id TU14842
length 757
lncRNA type sense_over
GC content 0.37
exon number 1
gene id G13325
representative True

Chromosome Information


Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1032284 ~ 1033040 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TACAAAGACAGCTAACACTTCTGTGTTTATCAGCCGCGAAAGTATAGTCAATATTCTCAAAGCGGCCTAATAATCGGCCCAGCCGATATATCTGTCTATAATATCAGTAATATTTCTGTGGCTCTGCAGACAAAAAACAAAGAGAAAACATGAGTATCTTGTGTAATGGGCACACTATGTCTGTCTGGTGCCCTTGTGATCACAACATCTTTAAAAACAGAATAAAGCTTTGTGTCCATATCAACAGGATCCTATCGCGGAGGAGAGGGGTAAATATGACAGCGAGATGTGAAACCCAATCCCGAGCCACAGTTCTCGCCTGGACGCAGCACCCTGTCTGAAATCCATCTGGACATGGTAATATGAGCCCACACTGATTGTTTTGAACAACTTTGGAAGCATATGGCCTGCTGCGACGAGCCGACAATTACTGAAATAAGTCCATTCACAATCTTTGTGGCCGCAATGATACGTGCTGAATCGTCTCTACCTGGACAAGACTATGAACAACTGCCTCGATCCACTGATGTTTCCAGAACAAACCACTTAAGAAGACTTCAGGCTAGCCAATTCCCAGAAGCCCCTGTCACTCACTTATTGGCACTGCAACACTTAATGCCTTTGTCTGTACTCCAATTTATCTTGTTATCAACAAATTGGGCTAACAGTTTGAAGCACGGGCTATTCAAAAACTGATTAGAAACATAATCCAGCGAGAAATATCATTGGAAAACTCTGCACACTAATAACCCCTGTATGTTCATATTTTTGTGCGGACTGGGCTGGGCGATATAGTGACTAGTATTTGTTCTGAAAGGGCGTAAAACAGTGATTTTTTTTTTCAATCATAGAAACCATCGTTTTAACAAAAAACAAACATTGTTGCCAAGTAGATTCAAAATGCTTGATTCATACAGTACAGAATCTGGTTATCAATAATCAAGGCATTTTTACTGCATTATATACACCAATATATATGCATTTTAAAAACTAATATTCATCTACCCATTCTTTAAATGCTTATGACTGATTTTTAAGTGACGCAAACAAATAAATGAACCGGAGTCAGACTGAATCAAACAATCAATCATTGAAACGATTCACAGAAATGAATCAAAACTTATCAACTCAAATGCTACTGATGTTTAAATCAGATGCTACTAAATCATCATTAAAACAAAGCTCACAAGATCACAAAACTACTACCACACAACCTTCAGGAAGCTTATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU14804 lncRNA downstream 48948 982923 ~ 983336 (-) True G13293
TU14797 lncRNA downstream 79291 952745 ~ 952993 (-) True G13286
TU14777 lncRNA downstream 110799 921263 ~ 921485 (-) True G13266
TU14776 lncRNA downstream 111139 920915 ~ 921145 (-) True G13265
TU14775 lncRNA downstream 112764 919239 ~ 919520 (-) True G13264
TU14847 lncRNA upstream 8741 1043661 ~ 1045223 (-) True G13330
TU14894 lncRNA upstream 51883 1086803 ~ 1115769 (-) True G13370
TU14895 lncRNA upstream 57596 1092516 ~ 1093860 (-) False G13371
TU14896 lncRNA upstream 57596 1092516 ~ 1093860 (-) True G13371
TU14887 lncRNA upstream 151240 1186160 ~ 1215510 (-) True G13364
CI01000001_01030701_01030988.mRNA mRNA downstream 1120 1030254 ~ 1031164 (-) True CI01000001_01030701_01030988
CI01000001_00925612_00928679.mRNA mRNA downstream 103335 925440 ~ 928949 (-) True CI01000001_00925612_00928679
CI01000001_00872245_00878013.mRNA mRNA downstream 154271 870880 ~ 878013 (-) False CI01000001_00872245_00878013
CI01000001_00839822_00841040.mRNA mRNA downstream 189863 839630 ~ 842421 (-) True CI01000001_00839822_00841040
CI01000001_00808831_00814314.mRNA mRNA downstream 217643 807938 ~ 814641 (-) True CI01000001_00808831_00814314
CI01000001_01056812_01066005.mRNA mRNA upstream 21532 1056452 ~ 1066123 (-) True CI01000001_01056812_01066005
CI01000001_01068423_01079855.mRNA mRNA upstream 32720 1067640 ~ 1080617 (-) True CI01000001_01068423_01079855
CI01000001_01158947_01164142.mRNA mRNA upstream 123478 1158398 ~ 1165151 (-) True CI01000001_01158947_01164142
CI01000001_01199556_01205086.mRNA mRNA upstream 164578 1199498 ~ 1205086 (-) True CI01000001_01199556_01205086
CI01000001_01293807_01304836.mRNA mRNA upstream 258778 1293698 ~ 1304836 (-) True CI01000001_01293807_01304836
TU14337 other downstream 635151 367242 ~ 397133 (-) True G12898
TU14333 other downstream 774767 257372 ~ 257517 (-) True G12894
TU14263 other downstream 897359 129502 ~ 134925 (-) True G12848
TU14286 other downstream 906827 122814 ~ 125457 (-) False CI01000001_00124107_00131285
TU15779 other upstream 728749 1763669 ~ 1767458 (-) False G14104
TU15917 other upstream 959290 1994210 ~ 1994898 (-) True G14219
TU15926 other upstream 1021054 2055974 ~ 2056478 (-) True G14228
TU15886 other upstream 1224469 2262344 ~ 2297212 (-) True G14188
TU17347 other upstream 3357394 4392314 ~ 4399515 (-) True CI01000001_04395469_04399381

Expression Profile